Kolteria novifilia: Pan216_18540
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Entry
Pan216_18540 CDS
T11180
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
knv Kolteria novifilia
Pathway
knv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
knv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Pan216_18540 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
knv03000
]
Pan216_18540 (alkA)
03400 DNA repair and recombination proteins [BR:
knv03400
]
Pan216_18540 (alkA)
Enzymes [BR:
knv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Pan216_18540 (alkA)
Transcription factors [BR:
knv03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Pan216_18540 (alkA)
DNA repair and recombination proteins [BR:
knv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Pan216_18540 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
RecR_HhH
MHYT
Motif
Other DBs
NCBI-ProteinID:
QDU61001
UniProt:
A0A518B1Y9
LinkDB
All DBs
Position
2410082..2411551
Genome browser
AA seq
489 aa
AA seq
DB search
MTLDAESCYRAIAARDERFDGVFFVAVTSTGIYCRPICTARTPRQDRCRYFASAAAAEGQ
GFRPCLKCRPELAPGFAPVDAGKRMAHVVANRIESGALDDEGSLERLAQEVGLGPRQIRR
LLKSELGVSPVGLAQTRRLLLAKQLLTETDLSAADVAFASGFGSVRRFNDLFRRHYQLAP
TQLRRSTPAPSEGATSLKLRLAYRPPYAWEEMLEFLAARTTRGVEVVEEGSYVRTVREGD
CRGWLRVSPRERRPELVVDVSLSLVPVLAHVLSRVKSLFDLGARPDVIDEHLRSDHRLAE
SLRRSPGLRVPGAFDGFEIALRAILGQQISVRAATDLAGRVADRFGEPIETPFPTLTHLS
PNAPRLAEATVAALAGLGMPGKRASSIRSLAAAVSEQRVALALAPRPEVVVEQLERLDGI
GPWTAHYIAMRALRWPDAFPHADLGLRKALGGIGSRELLRESMAWRPWRAYAAMHLWRIS
QRQNEKGRN
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacactcgatgccgaaagttgttaccgagcgatcgcggcgcgagacgagcgcttcgac
ggcgtcttcttcgtcgcggtgacgtcgacggggatctactgccgaccgatctgcaccgcc
cgtaccccgcgccaggaccgatgtcgctacttcgccagtgccgccgccgcggaggggcag
ggctttcgcccttgcttgaagtgccgtccggaacttgctcccggtttcgccccggtcgac
gcgggaaagcgaatggcccatgtggtggcgaaccgcatcgagtcgggggcgctcgatgat
gagggatcgctcgaacgtctcgcccaggaagtcgggctcggcccacgccagatccgtcgc
ttgctcaagagcgaattgggcgtttcgccagtgggactggctcagaccagacgcctgctc
ctcgccaagcagcttctcacggagaccgacttgagcgccgcggacgtcgcgttcgccagt
ggtttcggcagcgtgcgtcgattcaacgacctctttcgtcggcactatcagctcgccccg
acccagcttcgccgttccacacccgctccgagcgagggggcgacctcgctcaagctgcgc
ctggcgtatcggcctccttacgcttgggaggagatgctcgagttccttgccgcgcgcacg
acccgtggcgtggaagtcgtcgaagaggggagctacgtgcggacggtgcgcgaaggggac
tgtcgtgggtggctccgcgtctctcctcgtgagcgacgtccagaactagtggtggacgtc
tctctctcgttggttcccgtgctggcccatgtcctatcgagggtgaagtctctcttcgat
ctcggggctcgccccgacgtgatcgacgaacatttgcgtagcgatcatcgcttggcggaa
tcgctccgccggtcgccgggcttgcgggtacctggggcgttcgatggcttcgagatcgcg
ctgcgggcgatcctcgggcagcagatctccgtccgtgccgcgaccgatctggccggacgg
gtcgcggatcgcttcggggagccgatcgaaacgccgttccccacgctgacgcacctttcg
ccgaacgcacctcgactggccgaagcgacggtcgcggcgctcgccggacttggcatgccg
ggcaagcgcgcgtcctcgattcgttcgttggccgccgcggtcagcgagcagcgggtggcg
cttgcgctggcgccccggccggaagtggtggtcgaacaactcgagaggctcgacggcatt
ggaccctggaccgcccactacatcgcgatgcgggcactccgttggcccgacgcctttcct
catgccgacctcgggctgcgaaaagcgctcggcgggattggctctcgagaactcctgcgc
gagtcgatggcgtggcgtccatggcgggcctacgccgcgatgcatctatggcgaatcagt
cagcggcagaacgaaaaggggaggaactga
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