Kolteria novifilia: Pan216_41190
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Entry
Pan216_41190 CDS
T11180
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
knv Kolteria novifilia
Brite
KEGG Orthology (KO) [BR:
knv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
knv03016
]
Pan216_41190 (rtcB)
Enzymes [BR:
knv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Pan216_41190 (rtcB)
Transfer RNA biogenesis [BR:
knv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Pan216_41190 (rtcB)
Prokaryotic type
tRNA splicing ligases
Pan216_41190 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDU63241
UniProt:
A0A518B8E1
LinkDB
All DBs
Position
complement(5335880..5337340)
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AA seq
486 aa
AA seq
DB search
MGYEGPLEQIDANSWRIPKSYKSGMRVDGVIFADDAMMKKLRHDQAPDQVANVATLPGIQ
RASFAMPDIHWGYGFCIGGVCATDPDDGGVISPGGVGYDINCGVRLIRSHLTEKKLGKRL
RPLVDALFEAIPTGVGRGSRFRFSEKEIDQLLAKGPGYLVRDRGIGCERDLLFTEANGCL
EGARPDFVSQRAKQRGASQCGSLGSGNHFAEVQVVDHVFDEKVAATLGLFQGQVCVMIHS
GSRGLGYQVCDDTLRVFRDIPAKYGIDLPDRQLACAPIVSEEGERYLGAMRAAANYAWGN
RHLLMHQVREVFEEQFDRTWEDLGMDLVYDIAHNIAKFEEHDVAPGTKRRVCVHRKGATR
AFPPGHPELPDEYQSVGQPVMIPGDMGTASYVLVGAPGSMERTFGTTCHGAGRQMSRTAS
VKAARGRNIAKELAGRGVIARAHSRKGLEEEQPDAYKDVSMVVEVVARAGLSNKVARMRP
IGVIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgggctacgaaggtcctctcgaacagattgacgccaattcctggcgaattcccaagagc
tacaagtcggggatgcgcgtcgatggggtcatcttcgccgatgacgcgatgatgaagaag
ctccgccacgaccaggctcccgaccaggtcgccaatgtggcgacgctccccggcattcag
cgggcaagcttcgccatgcccgacattcactggggatacggattctgtatcggcggtgtt
tgcgccaccgatcccgacgacggaggagtgatctcgccgggaggcgtcgggtacgacatc
aactgcggggtgcggctcattcgcagccacctcaccgaaaagaagctgggcaaacgactc
cggcccctggtggacgccctcttcgaggcgattccgaccggggtcggccgcgggagtcgc
tttcggttctccgaaaaggaaatcgaccaactgctcgcgaaggggcccggatacctcgtg
cgcgatcggggcatcggctgtgagcgcgatctcctcttcaccgaggcgaacggttgtctc
gagggggctcggcccgactttgtcagccagcgggccaagcagcgaggtgcctcccagtgc
ggatcacttggatcggggaatcacttcgccgaggtccaagtggtcgaccacgtcttcgac
gaaaaggttgcggcgaccctcgggctcttccagggccaagtctgcgtcatgatccatagc
ggctcgcgcgggcttggctaccaggtctgcgatgacacgcttcgcgtctttcgagatatc
ccggcaaagtacgggatcgacttgccggatcggcagcttgcttgcgcgccgatcgtcagc
gaggagggagagcggtacttgggtgcgatgcgggccgcggcgaattatgcgtgggggaac
cgccatctcttgatgcaccaagttcgcgaggtgttcgaggagcagttcgaccgaacttgg
gaagacctcgggatggatctggtttacgacatcgcccacaacatcgcgaagttcgaggag
cacgatgtcgctcctgggaccaagcggcgcgtctgcgttcaccgaaagggagcgacccgc
gccttcccgcccggtcatccggaactccccgacgagtaccagtcggtggggcagccggtc
atgatccccggggatatgggaacggccagctacgtcctggtcggcgctcccggcagcatg
gaacgcaccttcggtacgacgtgccacggggcgggacgacagatgagccgtaccgcgagc
gtcaaggcggcgcgcgggcgaaacatcgcgaaggaactcgccgggcgcggcgtgatcgcg
cgggcgcacagccgcaaggggctcgaggaggaacagcccgacgcctacaaggatgtctcg
atggtggtggaggttgtggctcgcgccgggctttccaacaaggtcgcccggatgcggccg
attggtgtgatcaaggggtga
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