Kolteria novifilia: Pan216_45440
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Entry
Pan216_45440 CDS
T11180
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
knv Kolteria novifilia
Pathway
knv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
knv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pan216_45440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
knv03400
]
Pan216_45440 (mfd)
Enzymes [BR:
knv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pan216_45440 (mfd)
DNA repair and recombination proteins [BR:
knv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pan216_45440 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QDU63663
UniProt:
A0A518B9S3
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Position
5907211..5910474
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AA seq
1087 aa
AA seq
DB search
MSTVDAERTASLADLAARLVKDDSFQRLTKALRAGSSGTIDGAWGSSRFMAVAALAKVAP
ATTVLILPRANEIEPAVDDLRSFGVPAPCVFPSLEEPGQQDRAKRLRDEAFGRRLAVTKA
VAGADPPRVVVTTIHALLQPIPTLDHVRRHSRVLAKGETVDLEELSQWLLDHGWQRRDAV
ELPGEFSRRGGILDLYSIDAEDPLRIEFFGDEIDSLREFSVESQRSLGERDRAELTALTG
FDSVEAKQQPSGSCFSEICPAGSWFALAEPTDMKAEGNQYLNRLETPKELFTVEQVWGNV
LHHPTITLSSLPHATVEETCTLDVETVERFSGDVRRLGEEFDKSINDGRVLLVCHNEAES
TRLAEILAECRLLREGRIAFTTGRLAEGFRWISAGVVTISDHELFHRREARRVTPRRRHQ
SKAIDSFLDLREGDVVVHLGHGLSIYRGMKMLEKNGQLEEHLQLEFADQVMVYVPASKIG
LVQKYVGGSKTAPRLSKIGGVSWERRKKAVERAVRDLAGDLLEVQAARAARAGIAFPPDS
VWQREFEDAFEFTETQDQLVAIEEIRGDMERARPMDRLLCGDVGFGKTELAMRAAFKAVE
FGKQVAVLVPTTVLAEQHHRTFQERMAEFPFVIKVLSRFQTKGQQRKVVADAAEGKVDIL
IGTHRLLSRDVAFQDLGLVIVDEEQRFGVEHKERLKQLRQQVDLLTMSATPIPRTLHSAL
LGIRDISNLETPPRDRLAIETRICRFEASIVRHAVLRELNRNGQLYFVHNRVHDMKRVAD
RILEIVPEARITMCHGQMHEDDIEKAMVAFISGQADILLATTIIESGLDIPNANTIFINE
GDRYGLAELHQLRGRVGRSDKHAYCYVMLDDRPINPDALRRLKAIEEYSSLGSGFQIALR
DLEIRGAGNILGPEQSGHIAAVGYELYCQLLENAVRAEQRLPLNTYLDVTIELEWKAYLP
HEYLPGERTRIDTYRRLARLESPDEIDEFRRELEDRFGPVPETVEHLLQLAEMRLLAKIW
QIESVRPDDAGSLLVQFRDERRIRTLAGLRGDELKVVDRKTAYARVPHAERNAAGHAQRL
KRLLQPN
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgtcgacgccgagaggaccgcgtcgctcgccgacttggcggcgcgtttggtc
aaggatgattcattccagcgcctgacgaaagcgctgcgcgcgggctccagcggaaccatc
gatggagcgtggggatcgtctcgcttcatggcggtcgccgcgctcgcgaaggtcgcgccc
gcgaccacggtcctcatcctcccgcgagccaacgagatcgaacccgccgtcgacgatctt
cgttcgttcggcgtacccgcgccctgcgtctttccctccttggaagaacccggccaacag
gatcgagccaaacgactccgcgacgaggccttcggtcgtcgcctcgccgtgaccaaagcg
gtcgccggcgccgatccgccccgcgtcgtcgtcaccacgattcacgcgttgctgcaaccg
atcccgacgctcgaccacgtccgccgtcatagtcgcgtcctagccaaaggggagacggtc
gaccttgaggaactgtcgcaatggctcctcgatcacggctggcaacgtcgagacgcggtc
gaactgccgggcgagtttagccgtcgcggcggtatccttgatctctactccatcgatgct
gaggatcccttgcggatcgaattcttcggcgacgagatcgactcgctccgcgagttctcc
gtcgagagccaacgcagcctgggcgaacgtgatcgggcggaactgaccgcgctgaccggt
ttcgattccgtcgaggcgaagcaacaaccgtcgggtagttgcttctcggagatctgcccg
gccggctcctggttcgctctcgccgagccgaccgacatgaaggccgagggcaaccagtac
ctcaaccggctcgaaaccccgaaagagctcttcaccgtcgagcaggtttggggcaacgtg
ctgcatcatccgaccatcacgctctcgagcctgccccacgccaccgtcgaagagacctgt
accctcgatgtcgaaacagtcgaacgcttcagcggcgacgttcgacgcctcggagaggaa
ttcgacaagtcgatcaacgacggccgcgtcctgctcgtttgccacaacgaggccgagagc
acgcggctggccgagattctcgcggagtgccgactcctacgcgagggccgcatcgcgttc
acgaccggccggctcgccgaaggcttccgctggatcagcgccggcgtcgtgaccatctcc
gaccacgaactcttccatcgccgcgaggcccgccgcgtcacgccgcgacggcgccatcag
agcaaggcgatcgacagcttcctcgacttgcgcgaaggggacgtcgtcgtccacctcggc
cacggactctccatctaccgtggcatgaagatgctcgagaagaacgggcagctcgaggag
cacttgcagctcgagttcgccgaccaggtgatggtctacgttcccgcgagcaagatcggc
ctagtccagaagtacgtcggcggctcaaagaccgccccgaggctctccaagatcggaggc
gtctcgtgggaacgccgcaagaaggcggtcgagcgcgcggtgcgcgatctcgccggcgac
ttgctcgaagtccaagcggcgcgcgcggcgcgggcggggatcgcattccctcccgactcg
gtctggcaacgcgagttcgaggacgccttcgagttcaccgagactcaagaccagcttgtc
gcgatcgaggagattcggggcgacatggaacgagcgcggcccatggaccggctcctctgc
ggcgatgtcggcttcggcaagaccgagctggcgatgcgggccgccttcaaagcggttgag
ttcggcaagcaagtcgccgtcctcgtcccgaccaccgtgctcgccgagcagcaccatcgc
accttccaagaacgcatggcggagttccccttcgtcatcaaggtcctcagccgcttccag
accaagggccaacagcgcaaggtggtcgccgacgccgccgagggcaaggtcgacatcctg
atcgggacccatcggctcctctcgcgcgatgtcgcctttcaggatctcggcctcgtcatc
gtcgacgaggaacagcggtttggcgtcgagcacaaggagcgactcaagcagcttcggcag
caagtcgacctcttgacgatgagcgcgacccccatcccgagaacactgcactcggcgctg
ctcgggattcgcgacatctcgaatttggaaacgcccccgcgggaccggctcgcgatcgag
acccgcatctgccgcttcgaagcctcgatcgtcagacacgcggtgcttcgcgaactcaac
cgcaacgggcaactctacttcgtccacaaccgcgtccacgacatgaaacgcgtcgccgac
cggatcctcgaaatcgtccccgaggcccggatcacgatgtgccacggccaaatgcacgaa
gacgacatcgaaaaggcgatggtcgcgttcatctccgggcaggccgacatcctgctcgcc
acgacgatcatcgagagcggcctggatatccccaacgccaacaccatcttcatcaacgaa
ggggaccgctacggcttggccgagcttcaccagcttcgtggccgggtcggtcgctccgac
aagcacgcttactgctacgtcatgctcgacgaccgtccgatcaatcccgacgcgttgcga
cgcctcaaggcgattgaggaatacagttcgctcggctcgggattccagatcgccttgaga
gacttggagattcgcggagcgggcaacatcctcggccccgagcagagcgggcacatcgcc
gcggtcgggtatgagctctattgccagcttctcgaaaacgcggttcgtgccgagcagcgg
ctgccacttaacacctacctcgacgtcacgatcgagctcgagtggaaggcgtacctaccg
cacgagtacctgccgggcgagcgaacccggatcgacacctaccgacgcttggcccggctc
gagagccccgacgagatcgacgagttccgccgcgaactcgaggatcgcttcggccccgtt
cccgagacggtggagcatctgctgcaactggcggagatgcggcttctggcgaagatatgg
cagatcgaatcggttcgtcccgacgacgccggttccctgcttgtgcaatttcgcgacgaa
cgccgaatccgcaccctcgccggactgcgcggtgacgagctcaaggtcgtcgatcgcaag
accgcctatgcccgggttccccacgccgagcgaaacgcggccggccacgcccaacgcctc
aaacgcctcttgcagccaaactga
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