Kolteria novifilia: Pan216_49220
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Entry
Pan216_49220 CDS
T11180
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
knv Kolteria novifilia
Pathway
knv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
knv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Pan216_49220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
knv03021
]
Pan216_49220 (rpoC)
03400 DNA repair and recombination proteins [BR:
knv03400
]
Pan216_49220 (rpoC)
Enzymes [BR:
knv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Pan216_49220 (rpoC)
Transcription machinery [BR:
knv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Pan216_49220 (rpoC)
DNA repair and recombination proteins [BR:
knv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Pan216_49220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
LSDAT_prok
Motif
Other DBs
NCBI-ProteinID:
QDU64034
UniProt:
A0A518BAM4
LinkDB
All DBs
Position
6372189..6376481
Genome browser
AA seq
1430 aa
AA seq
DB search
MSIAEHAYDRINDYGAVKISLASPHDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPIVHIWFFKAMPSR
LGTLLDMRTTALEKIIYYQDYVVVDPGETALKERQLLTDEEYRRAREQFGDGFQADMGAE
AVRRLLTRLDLVKLPDELRDDLSKTASKQKQKDLSKRLKVVEALRDSENKPEWMVLDVVP
VIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQSV
DALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELKL
NQCGLPSKKIALELFQPFIIRRLKELGHADTIKSAKKMLERKDEQVWDILEEVTRNHPVL
LNRAPTLHRMGIQAFEPVLIDGNAIKIHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAST
LMMSTNNIFSPANGAPIISPSQDIVMGCYYMTVPREGELGEGKIFASPMEVFLAFALKTV
GVHARIKVRIPANKKVVGEGASNYQPGGLLETTVGRILFNEIVSDRMPYYNQTNGQKQLS
GIIADCYRMLGRRETIDLLDRMKETGFHEATRSGLSFATDDLKTPDNKPTVIAETEKKIM
QHRRNYQRGIITDTERHHAVLDAWTHARDEITKAMMKELEDDRRRGEQYLNPIYLMAHSG
ARGGVDQIRQLAGMRGLMAKPSGAIIEEPIKANFRSGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVITMVDCGTTRGVTKGVIYKGEQIERSLSDGIHGRVGRDNIV
DPITDEVILRENEMITHHIAQRIEALGIDKLTVRSPMTCDAPLGVCRHCYGMDLATGALV
EEGTAVGVIAAQSIGEPGTQLTMRTFHIGGVASRSVEESEVRCKKTGTIRFERVSAVDTG
DGNLVALARNGEVYVEDAKGRELEKYSIPNGAFLYVKEGQEVQGGAPLCRWDPHTVPILS
EVGGRVRFEDIIEGETLRKEQDAGGSERWQIMEHKGDLHPQIILEDATGQILHVYYIPEK
AYVEVREGQQITAGTQVAKTPRDVAGTQDITGGLPRVTEIFEARRPKEPAIIAEIDGEVE
LSPDKKRGKRSIIVRNESGMEREHLVTTGKSLRVHSSDYVRAGDPICEGPLVPHDILRIK
GEEAVQDYLVREIQNVYRSQRVEIDDKHIEIIIAQMLRKVKVETVGDSGLLPESTIDKFR
FRRRNQELVDSVRVTLAGDSDFKEGVLVPKDVFEEEVNRITEEGGTPPECAKPIPATAST
QLLGITKASVQSDSFISAASFQETTKVLTEAAIASKIDYLVGLKENVILGHLVPAGTGFR
MHHEAEVRIKPEALEELEGKTTRAPEPVAETPAPKESAPAAEATGANVEE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatcgctgaacatgcctacgaccgcatcaacgactacggagccgtcaagatcagc
ttggcgagcccccacgacattcggagctggtcgttcggtgaagttaagaaaccggaaacg
atcaattaccggacctaccgtcccgaaaaggacggcctcttctgcgagcgcatcttcggc
ccggagaaggactgggaatgcgcctgcggcaagtaccgggggatgaagtacaaggggatg
atctgcgatcgctgcggcgtcaaagtcacccacagccgggtgcgccgcaagcggatgggg
cacatcgagctcgccgccccgatcgtgcacatctggttcttcaaggcgatgcccagccgt
ctgggcaccctgctcgacatgcgcaccaccgccctcgagaagatcatctactaccaggat
tacgtggtggtcgatccgggcgagacggccctcaaggagcgccaactcctcaccgacgag
gagtatcgccgcgcccgcgagcagtttggcgatggcttccaagccgacatgggcgccgaa
gcggtgcgccgtctgctcacccgtcttgacctcgtcaagcttcccgacgagctacgcgac
gatctctccaagaccgccagcaagcaaaagcaaaaggatctctccaagcggctcaaggtc
gtcgaagcgctgcgggacagcgagaacaagcctgagtggatggtcctcgatgtcgtcccg
gtcatcccgccggaccttcgcccgctcgtcttgctcgatagcggcaacttcgccaccagc
gacttgaacgacctctatcgccgtatcatcaaccggaacaatcgtctcaagaagctcgtc
gacctcaacgcgccggaagtcatcatccgcaacgaaaagcggatgcttcagcagtcggtc
gacgccctcttcgacaacaaccgctgcaagcgaccggtcctcggttcctccaaccggccg
ctgaaaagcttgaccgacatgatcaagggtaagcagggccgcttccgcgaaaacctgctc
ggcaagcgcgtcgattactccgcccgaagcgtcatcgtcgtcggtccggagctgaagctc
aaccagtgcggcttgccctcgaagaagatcgccctggaactcttccagcccttcatcatc
cggcgcctcaaggaactcggtcacgccgacacgatcaagagcgccaagaagatgctcgaa
cgcaaggacgagcaagtctgggacatcctcgaagaggtgacccgcaaccatccggtcctg
ctcaaccgtgctccgaccttgcaccgcatgggtatccaagccttcgagccggtcctgatc
gacggcaacgcgatcaagatccacccgctggtctgcaagggcttcaacgccgacttcgac
ggcgaccaaatggcggtccacctgccgttgtcgatcgaagcgcaagtcgaagcctcgacg
ctgatgatgtcgaccaacaatatcttctccccggccaacggggcgccgattatcagcccg
agccaagacatcgtcatgggttgctactacatgacggtcccgcgcgaaggggagctcggc
gaaggcaagatcttcgcttcgccgatggaggtcttcctcgcgttcgcgctgaagaccgtc
ggcgtccacgcccggatcaaggtccgaattcccgccaacaagaaggtcgtcggcgaagga
gcgtccaactaccaacccggtgggctgctcgagacgaccgtcggtcgcattctcttcaac
gagatcgtcagcgatcgcatgccgtactacaaccagaccaacggtcaaaagcagctctcg
ggcatcatcgccgactgctaccgaatgctgggtcggcgcgagacgatcgacctgctcgat
cgcatgaaggagaccggcttccacgaggcgacccgaagcgggctgagcttcgcgaccgac
gacctcaagacgccggacaacaagccgacggtcatcgccgagaccgagaagaagatcatg
cagcaccgccgcaactaccaacgcggcatcattaccgacaccgaacgtcaccacgcggtg
ctcgacgcctggacccacgcccgtgacgagatcaccaaggcgatgatgaaggagctcgag
gacgaccgccgtcgtggcgagcaatacctcaacccgatctacttgatggcccactccggt
gctcgtggtggtgtcgaccagattcgtcagctcgccggcatgcgtggcctcatggccaag
ccgagtggggcgatcatcgaagagccgatcaaggcgaacttccgctcgggcctgacggtg
ctggagtacttcagctcgacgcacggtgctcgaaagggcttggccgacacggcgctgaag
acggccgactccggttacctgacgcgtaaactcgccgacgtcgcccaaaacgtcgtcatc
accatggtcgactgcggcaccacccgcggtgtcaccaaaggtgtcatctacaagggtgag
cagatcgaacggagtctctccgacggtatccacgggcgggtcggacgcgacaacatcgtc
gatccgatcaccgacgaggtcatcttgcgtgagaacgagatgatcactcaccacatcgcg
cagcgaatcgaggccctcggcatcgacaagctcaccgtccgtagcccgatgacgtgcgac
gccccgctgggtgtctgtcgtcactgctacggcatggatctcgccaccggtgctctcgtt
gaggaagggaccgcggtcggcgtgatcgcggcccagtcgatcggcgagccgggcacgcag
ctcacgatgcgtaccttccacatcggtggtgtcgcgagccgctcggtcgaggagagcgaa
gtccgctgtaagaagaccggaacgatccgcttcgagcgcgtctccgcggtcgacaccggc
gacggcaacctcgtcgcgcttgcccgtaatggtgaagtctacgtcgaggacgccaagggt
cgtgagctcgaaaagtactccatccccaatggtgcgttcctctacgtgaaggaaggccag
gaagtccagggaggagccccgctctgccgctgggatccgcacaccgtgccgattctttcg
gaagtcggcggtcgcgtccgcttcgaggacatcatcgaaggcgaaacgcttcgcaaggag
caggacgccggcggttccgagcgttggcagatcatggaacacaagggcgatctgcacccg
cagatcatcctcgaggacgccaccggccagatcctgcacgtctactacatcccggaaaag
gcttacgtcgaagtccgggaaggtcagcagatcaccgccggaacccaggtcgccaagacg
cctcgcgacgtcgccggtacccaggacatcaccggtggtctgccgcgggtcacggagatc
ttcgaggcacgtcgtccgaaggagccggccatcatcgcggagatcgacggtgaggtcgaa
ctctcccccgacaagaagcgcggcaagcggtcgatcatcgtccgcaacgagtcgggcatg
gaacgcgagcatctggtcacgaccggtaagtcgcttcgcgttcacagtagcgactacgtc
cgtgccggcgatccgatctgtgaaggtccgctcgttcctcacgacatccttcgcatcaag
ggcgaagaggcggtgcaagactacctggtgcgggagattcagaacgtctaccgcagccaa
cgggtcgagatcgatgacaagcacatcgagatcatcatcgcccagatgctccgcaaggtg
aaagtcgagacggtcggggactcgggactgttgcccgaatcgacgatcgacaaattccgc
ttccgtcgccgcaaccaagagctcgtcgactcggtccgggtcacgctcgcgggcgattcc
gacttcaaggaaggggtgctcgttccgaaggacgtcttcgaagaggaagtcaaccgcatc
accgaggaggggggaacgcctcccgagtgtgccaagccgatcccggcgaccgcgagcacc
caactcttgggcatcaccaaggcctcggttcaatcggacagcttcatctcggcggcgagt
ttccaggaaacgaccaaggtcctcaccgaagcggcgatcgccagcaagatcgactacctc
gtcggcctcaaggagaacgtcatcctcgggcacctcgtccccgccgggaccggattccgg
atgcaccacgaggcggaggttcgcatcaagcccgaggctctcgaggaactcgaggggaag
accacccgggcaccggaaccagtcgccgagacaccggccccgaaagagtccgctcctgcg
gcggaagcgaccggcgccaacgtcgaggagtaa
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integrated database retrieval system
