Kingella oralis: H3L93_03330
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Entry
H3L93_03330 CDS
T06724
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
koa
Kingella oralis
Pathway
koa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3L93_03330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koa03019
]
H3L93_03330
03009 Ribosome biogenesis [BR:
koa03009
]
H3L93_03330
Enzymes [BR:
koa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H3L93_03330
Messenger RNA biogenesis [BR:
koa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3L93_03330
Ribosome biogenesis [BR:
koa03009
]
Prokaryotic type
rRNA processing factors
H3L93_03330
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
QMT43383
LinkDB
All DBs
Position
622112..625015
Genome browser
AA seq
967 aa
AA seq
DB search
MKRMLFNARQAEELRVAIVDGQTLIDLDIETLGKEQRKGNIYTGTITRIEPSLEACFVDY
GMDRHGFLPFKEVSRAYFQDYEGGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRIEGEDRAELKEAMAQLDVPHGMSLIARTAGIGRTSEELAW
DFNYLLQLWRAIEEAAAAHPEPYLLFMESSLVIRAIRDYFRPDIGEILVDNPEVYEQVSE
FMSYVMPNNLGRLKLYDDHIPLFSRLQIEQQIETVFSREVTLPSGGAIVIDHTEALVSVD
VNSARSTRGADIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQREVENTL
KDALKRDRARVQMGKLSKFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIESTALHV
LRLIQDAAMKENTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNPHLENPHY
EISRIRVDDLDDNAAPSYKRVTQPESSETVPFANKKGEKAMHPEPAVKGVHHASPPPVVA
SSSQSWWESFKGWLKKLFGGDAGEPAAPAKKSSSRNERSGGTSNKRSNRRNKRRESSEEK
SANGNANNNGNSSNGNNGERKNSRGRNANTAANEENAEAKALMQPENATAKAEKEPRNSR
NKGEQRSRNRNQANANQAADAAADNSVANVAQVAEAQGQPEKESGKKSSRNRKQKPVVVR
LGDDGRSESPDNAGGNKRRRRPQKQGDAVRVTVAPAPDSVAAIAQRVRAAVAHVLAIEAG
KVPPSRLAADDEVGSLKTESAEMAAESMAATEDAVVARASAYVEQAQITVLHGSLKTERG
EAGAETDAAAPQAVEAADAVSSAAESGSLKTADTADETQLSATQAVAAETETVSPAQVAA
ARSASSFNLAEIVAASGLQFVETDAAALAAEAERGQPAPEPRLRRSDVPRVETAVLAVEM
VQVETAK
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctatttaacgcccgccaagcagaagaattgcgcgtggcgattgtggac
ggtcaaaccctgattgacctagacattgaaacgctcggcaaagagcaacgtaaaggcaat
atttacacaggcaccatcacccgcattgagccatcgctggaagcctgctttgtggattac
ggcatggacagacacggctttttgccgtttaaagaagtctcccgcgcctattttcaagac
tacgaaggcggcaaagttcgcatccaagacgtgctcaaagaaggcatgcaggtgattgtg
caagtggaaaaagacgagcgcggcaacaaaggcgcggcactgaccacctacatcagccta
gcagggcgttatttggtgttgatgcccaacaacccgcgcggcggtggcgtatcgcgccgc
attgaaggcgaagaccgcgctgagttgaaagaagcgatggcgcaattggatgtgccacac
ggcatgagcctgattgcccgcaccgcaggcatcgggcgcacatccgaagaattggcttgg
gatttcaactatttattgcaactttggcgtgccattgaagaagccgcggctgctcatccc
gagccttatttgctgtttatggaaagttcgttggtgattcgcgccatccgcgattatttc
cgccccgacatcggcgaaattctggtggacaacccagaagtttacgagcaagtgtctgaa
tttatgagctatgtgatgcccaataatttaggcaggctgaaactgtatgacgaccatatt
ccgctcttttcgcgtttgcaaattgagcagcaaattgaaaccgtgttctcgcgcgaagta
acgctgcccagcggcggcgcgattgtgattgaccacaccgaagccttggtgtcggtggac
gtgaactccgcccgctccacacgcggcgcagacatcgaagaaaccgcatttcgcaccaac
atggaagcggcggaagaagtcgcccgccaaatgcgcctgcgcgacttgggcggcttggtg
gtgattgacttcattgacatggaagacgccaagcaccagcgcgaagtggaaaacacgctg
aaagacgcgctcaaacgcgaccgcgcgcgcgtgcaaatgggcaaattgtccaaatttggc
ttgctggaattgtcgcgccaacgcttgcagcccgcgctggcagaatccagccacatcgct
tgcccacgctgcgcaggcacaggcgtgattcgcagcatcgaatccaccgcgctgcacgtt
ttgcgcctgattcaagacgcggcgatgaaagaaaacacgggcgaagtgcacgcacaagtg
cctgttgatgtggcgactttcttgctcaacgaaaaacgcgccgaattgtttggcatggaa
gagcggctggacgtgtcggtgttcctgattcccaatccgcatttggaaaacccgcactac
gaaatttcgcgcattcgcgtggacgatttggacgacaacgccgcgcccagctacaagcgc
gtaacgcagcctgaaagcagcgaaaccgtgccctttgccaacaaaaaaggcgaaaaagcc
atgcaccccgagcccgcagtgaaaggcgtgcatcacgcttcgccgccgcctgtggtggca
agcagcagccaatcttggtgggagagctttaaaggctggctgaaaaaactgtttggcggc
gatgcaggcgaacctgccgcgcccgcgaaaaaatcatctagccgcaacgaacgcagcggc
ggtacaagcaataaacgcagcaaccgccgcaataaacgccgcgaaagcagcgaagaaaaa
tccgccaacggcaatgccaataacaatggcaacagcagcaatggcaacaacggcgagcgc
aaaaattcgcgtggacgcaatgccaacaccgctgccaatgaggaaaacgccgaagccaaa
gccttgatgcagcctgaaaacgcgaccgccaaagcggaaaaagaaccgcgcaacagccgc
aacaaaggcgagcagcgcagtcgtaaccgcaatcaagcaaacgccaaccaagcggcggat
gcagcggcagacaacagcgttgccaacgttgcccaagttgccgaagcacaagggcagcct
gaaaaagagagcggcaaaaaatccagccgtaaccgcaagcaaaaacctgtggtggtgcgc
ttgggcgatgatggacgcagcgaaagccctgacaacgcgggtggaaacaaacgccgccgc
cgtccgcaaaaacaaggcgatgccgtgcgcgtaaccgttgcgcctgcgcctgattcggta
gccgcgattgcccagcgcgtgcgcgcagccgtggcgcatgtgttggcgattgaagcgggc
aaagtgccgcccagccgtttggctgcggatgacgaagtgggcagcctgaaaaccgaaagt
gccgaaatggcggcggaaagcatggcggcaacagaagatgccgtggttgcccgagcgagt
gcttatgtggaacaggcgcaaatcaccgtgttgcacggcagcctgaaaaccgaacgcggt
gaagcgggggcagaaacggatgccgccgcgccgcaagcggttgaggcagcggatgctgtt
tccagcgcagccgaatcgggcagcctgaaaacggcggatacggcggatgaaacgcagcta
agcgcaacgcaagcggttgcggcggaaaccgaaaccgtttcgcccgcacaagtggctgcc
gcccggtctgcttcgtcgttcaaccttgccgaaatcgttgccgcatcgggtttgcagttt
gtggaaaccgatgccgccgcgctggcagccgaagccgaacgcgggcaacccgcgcccgaa
ccccgtttgcgccgcagcgatgtgccgcgcgtggaaaccgcggtgcttgcggtggaaatg
gttcaggtggaaaccgctaaatag
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