Kingella oralis: H3L93_12495
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Entry
H3L93_12495 CDS
T06724
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
koa
Kingella oralis
Brite
KEGG Orthology (KO) [BR:
koa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
koa03016
]
H3L93_12495
Enzymes [BR:
koa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H3L93_12495
Transfer RNA biogenesis [BR:
koa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H3L93_12495
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
QMT42743
LinkDB
All DBs
Position
complement(2324987..2326846)
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AA seq
619 aa
AA seq
DB search
MNIFYEDGGSLKVASIVQKNDATYQADTQHGKRVKIKAASAFIEFDGDMDAFLSAAQSEA
AEIDTALLWEAVGEDEFSAEQAAAEYFGSQTSKTQLAATIIALYAAPMYFHKKGKNNFRA
APADILQQALATMQRKAEQEAQMQAWADSMVSGCLPDAIAADLPKILHAPDKQALSYKAF
CKAADALKLSAYELAKHIGAIQALPDYLVQRFEYKNFPQGIGFAHVAEPRQPENNLPLAE
NVRAFSIDDQDTSEVDDALSVQDLGGGAKRIGIHIAAPALAIEADSEMERIVFQRQSTVY
YPAHKITMLPESWISTFSLDAGAARPAFSVYFNVSAEGELSAPETKIERVFIETNLRIQD
IEPHFNSETGIGSAAEPQFPHHADLIYLLNLAYTLQKRRDRYEDPAAPKKYDYGIEFDAQ
GKVRITRRERGSPIDTLVSEMMILANTTWAQMLHDNDISGIFRVQPSGRVRMSTQSEPHI
GMNVQHYGWFTSPLRRACDYVNQKQLQTLLQNTPPRFGKNDSALFTELTAFETTYAAYRE
FQDNMESYWSLVWLEQENVREINATVLKDDLVRIDGLPLVARATGIPLEIAPKTLIKLAV
SEVDSEKQFVALKYVNVAD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaacattttctacgaagacggcggcagcctgaaagttgccagcatcgtccaaaaaaac
gacgccacctaccaagccgacacgcaacacggcaagcgcgtcaaaatcaaagccgccagc
gcattcattgaatttgatggcgacatggatgcctttttatccgccgcgcaaagcgaagcc
gccgaaatagacaccgcgctgctgtgggaagccgtgggcgaagacgaattttccgccgaa
caagccgccgccgaatattttggcagccaaaccagcaaaacccagcttgccgccaccatc
atcgcgctatacgccgcgccgatgtattttcacaaaaaaggcaaaaacaattttcgcgcc
gcgcctgccgatattttgcagcaagcccttgccaccatgcagcgcaaggccgagcaagaa
gcgcaaatgcaagcatgggcagatagcatggtttcaggctgcctgcccgatgccatcgcc
gccgatttgcccaaaattctgcacgcgcccgataagcaagcgctgtcctacaaagccttt
tgtaaagctgccgatgcgctcaaactttccgcctacgagcttgccaaacacatcggtgcc
atccaagccttgcccgattatttagtgcaacgctttgaatacaaaaactttccgcaagga
atcggctttgcccatgttgctgagccaaggcagcctgaaaacaatttaccccttgccgaa
aacgtgcgcgccttttccattgacgaccaagacaccagcgaagtggacgacgcgctttcc
gtgcaagacttgggcggcggcgccaaacgcatcggtatccacatcgccgcccccgcgctc
gccatagaagccgacagcgaaatggaacgcatcgtgttccagcgccaatccaccgtatac
taccccgcgcacaaaatcaccatgctgcctgaaagctggattagcacatttagcctagac
gcaggcgcggcgcggcccgcattcagcgtgtatttcaacgtgtccgccgagggcgagctg
tccgcgcccgaaaccaaaatcgagcgcgtgttcatcgaaaccaacctgcgcattcaagac
atcgagccgcatttcaacagcgaaacgggcatcggcagcgcagccgagccgcagttcccg
catcatgccgatttgatttacctgctgaatttagcttacacattgcaaaaacgccgcgac
cgctacgaagaccccgccgcgccgaaaaaatacgactacggcattgaatttgacgcgcaa
ggcaaggtgcgcatcacccgccgcgagcgcggttcgccgattgacacgctggtaagcgaa
atgatgattttggcgaacaccacatgggcgcaaatgctgcacgataacgacatcagcggc
atttttcgcgtgcagcccagcgggcgcgtgcgcatgagcacccaatccgagccacacatc
ggcatgaacgtgcagcattacggctggtttacctcgcccttgcgccgcgcctgtgattat
gtgaaccaaaagcaactgcaaacactgctgcaaaacacgccgccgcgttttggcaaaaac
gacagcgcgttgtttaccgagctaaccgcgtttgaaaccacctacgccgcctaccgcgag
ttccaagacaacatggaaagctattggtcgctggtgtggctggaacaggaaaacgtgcgc
gaaatcaacgccacggtgttgaaagacgacctcgtgcgcatcgacggcttgccgctggtg
gcgcgcgccacgggcatcccgctggaaatcgcgcccaaaacgctaatcaagctggcggtg
agcgaagtggacagcgagaagcagtttgtggcgttgaaatatgtgaacgtggcggattga
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