Kingella oralis: H3L93_12645
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Entry
H3L93_12645 CDS
T06724
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
koa
Kingella oralis
Pathway
koa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3L93_12645 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koa03019
]
H3L93_12645 (recQ)
03400 DNA repair and recombination proteins [BR:
koa03400
]
H3L93_12645 (recQ)
Enzymes [BR:
koa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3L93_12645 (recQ)
Messenger RNA biogenesis [BR:
koa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3L93_12645 (recQ)
DNA repair and recombination proteins [BR:
koa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H3L93_12645 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
NRBF2_MIT
Motif
Other DBs
NCBI-ProteinID:
QMT42769
LinkDB
All DBs
Position
complement(2352604..2354418)
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AA seq
604 aa
AA seq
DB search
MIPAQQILQDTFGYPNFRGNQAQIIDTVVQGNSAFVLMPTGGGKSLCYQIPALMREGVAI
VISPLIALMDDQVANARAVGIHAAAVHSGTPADTIRQIAEDIDSGSLKLLYVSPERLTTE
KFLRFLDHTTVSLFAIDEAHCVSQWGHDFRPEYQQLSLLAQRYPHIPRIALTATADAQTR
LDIKHYLQLNDAAEFISSFDRPNIHYQVIERQNGKKQLLDFIQKQAAGQSGIVYCLSRKS
VEDIAQYLCDSGLNALPYHAGLPIQTRSQNQHRFTHEDNIIIVATVAFGMGIDKPDVRYV
AHLDMPQSVEHFYQESGRAGRDGLPATSWLCYGMNNLMLLRERIQESSVSEQQKQIELQK
LNAMFDICETAECRRVLLLRHFGEESQPCGNCDNCQHPPIRFDATELVQKLLSCIYRVGQ
QYAAGYVINVLRGKADDWITRNGHEQLSTFGIGAGLTDKNWRNIIRQCIGQNLIAADVSH
HQALMLTPAALPVLKGEQSVMLRPLKREKAATQSGSLKSQWLRTEREERIWQALRQWRLD
QARSENIAAYMICGDKTLQDIIRQQPRTLADLPPIYGLGDAKIAKYGQAILDVYLPLNGQ
EAGG
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgatccccgcccagcaaatcctgcaagacaccttcggctaccccaacttccgcggcaac
caagcccaaatcatcgacaccgttgttcaaggcaacagcgcctttgtgctgatgcccacc
ggcggcggcaaatcgctgtgctaccaaatccccgccctgatgcgcgaaggcgtcgccatt
gttatctccccgctcatcgccctgatggacgaccaagttgccaacgcccgcgccgtgggc
atccatgccgccgccgtacacagcggcacgcccgccgacaccatccgccaaatcgccgaa
gacatcgattcaggcagcctgaaactgctctacgtttcccccgaacgccttaccaccgaa
aaattcctacgctttttagaccacaccaccgttagcctattcgccatcgacgaagcccat
tgcgtgagccaatgggggcacgactttcgcccggaataccaacaactcagcctgctcgcc
cagcgctatccgcacatcccgcgcatcgcgcttaccgccaccgccgatgctcaaacccgc
ctagacatcaaacactatttgcagctaaacgatgccgccgaattcatatccagcttcgac
cgccccaacatccattatcaagtgatagaacggcaaaacggcaaaaaacagctgctggat
ttcatccaaaaacaagccgcagggcaaagcggcatcgtgtattgcctgagccgcaaaagc
gtggaagacatcgcccaatatctgtgcgacagcgggctgaacgcgctgccgtatcacgca
ggcttgcccatccaaacccgcagccaaaatcaacaccgcttcacgcacgaagacaacatc
atcatcgtcgccaccgttgccttcggcatgggcatcgacaaacccgacgtgcgctacgtt
gcccacttggatatgccgcaaagcgtggagcatttttaccaagaaagcggcagggcgggg
cgcgacggcttgcccgccaccagctggctgtgctacggcatgaacaacctgatgctgctg
cgcgagcgcatccaagaaagcagcgtgagcgagcagcaaaagcaaattgagctgcaaaaa
ctcaacgccatgtttgacatctgcgaaaccgccgaatgccgccgcgtgttgctgttgcgc
cactttggcgaagaaagccagccctgcggcaactgcgacaactgccaacacccgcccatc
cgctttgatgccaccgagttggtgcaaaagctgctgagctgcatctaccgcgtggggcag
caatacgccgcaggctatgtgattaacgtgttgcgcggcaaggcggacgattggattacg
cgcaacgggcacgagcaactcagcaccttcggcatcggcgcaggcttaaccgacaaaaac
tggcgcaacatcatccgccaatgcatcgggcaaaacctcatcgccgccgatgtaagccac
caccaagccctgatgctcacccccgccgcgctgcccgtgttaaaaggcgagcaaagcgtg
atgctgcgcccgctcaaacgcgaaaaagccgccacccaatcgggcagcctgaaaagccaa
tggctgcgcaccgagcgcgaagaacgcatctggcaagccctgcgccaatggcggctggac
caagcccgtagcgaaaacatcgccgcctacatgatttgcggcgacaaaaccctgcaagac
atcatccgacagcagccgcgcacccttgccgacctgccgcctatctacggcttgggcgat
gccaaaatcgccaaatacgggcaggcgattttggatgtgtatctgccgttgaacgggcag
gaagcgggcggttga
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