Kosakonia sp. SMBL-WEM22: HF650_07685
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Entry
HF650_07685 CDS
T08549
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kob
Kosakonia sp. SMBL-WEM22
Pathway
kob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF650_07685 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kob03019
]
HF650_07685 (rhlE)
Enzymes [BR:
kob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF650_07685 (rhlE)
Messenger RNA biogenesis [BR:
kob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF650_07685 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QNQ19642
LinkDB
All DBs
Position
1598741..1600171
Genome browser
AA seq
476 aa
AA seq
DB search
MSFDALGLNPDILRAVAEQGYHQPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL
QRLVQSQPHAKGRRPVRALILTPTRELAAQVGENVQEYSQYLNIRSMVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNALKLDSVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKQLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALADFKSGSIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKKEIPRIAVAGYEPDPSIKAEPIQNGRGQNGGRQGGGGRGQGGGGGRSQSAPRRSE
GEGQKARHPRRSNDGGAAKSEGGAAKPVGNRRLDGGAAKPANNGARRRRPRKPASA
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatgcccttggcctgaatccggatatcctgcgcgcagttgcggagcagggt
taccaccagccgacccctattcaacagcaggcgatccctgcggtgctgcaaggccgcgat
ctgatggccagcgcccagaccggcaccggtaaaaccgctggttttacgctgcccctgctg
caacgtctggtgcagagccagcctcacgcgaaaggccgccgtccggtacgcgccctaatc
ctgaccccaacccgtgaactcgcggcgcaggtgggcgagaacgtgcaggagtatagccag
tacctcaatattcgttcgatggtcgtcttcggcggcgtcagcatcaacccgcagatgatg
aaactgcgcggcggcgttgacatcctggtggctaccccgggtcgtctgctcgatcttgaa
caccaaaatgccctgaagctcgacagcgtggaaattctcgtgctggatgaagctgaccgt
atgctggatatgggctttatccacgatattcgccgcgtgctggcgaagctgccggcgaaa
cgccagaacctgctcttctccgcgaccttctcggatgagatcaaacagctggcagaaaaa
ctgttgcacaacccgctggaaatcgaagttgcgcgccgtaacaccgcttccgagcaggtg
acgcagcacgttcactttgtggataagaaacgcaagcgggaactgctgtcgcagatgatt
ggcgaaggtaactggcagcaggtgctggtctttacccgtaccaagcatggcgctaaccat
ctggccgaacagctgaacaaagatggcatcaccagtgcggcgatccacggtaataagagc
cagggcgcacgtacccgcgcgctggcagactttaaatctggttcgattcgtgtgctggta
gcaacggatatcgccgcgcgtggcctggatatcgaagagttgccgcatgtcgtcaactat
gagttgccgaacgtgccggaagattatgtacaccgcatcgggcgtaccggtcgcgctgcc
gccaccggcgaagcgctgtcgctggtctgtgtcgatgagcacaaactgctgcgcgacatt
gagcgtctgctgaaaaaagagatcccgcgaattgccgttgcaggctatgagccggatcca
tcaattaaagcggagccgatccagaatggccgtggtcagaacggcggccgtcagggcggc
ggtggacgcgggcagggcggtggcggcggtcgcagccagtctgcgccgcgccgcagcgaa
ggtgaagggcagaaagcgcgtcatccgcgtcgcagtaacgacggcggagccgcgaaatcg
gaaggcggtgccgcgaagcccgtgggcaatcgccgtcttgatggcggggcagcgaaaccg
gcaaacaacggcgcgcgtcgtcgccgtccgcgtaaacccgcttctgcgtaa
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