Kosakonia sp. SMBL-WEM22: HF650_09330
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Entry
HF650_09330 CDS
T08549
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kob
Kosakonia sp. SMBL-WEM22
Pathway
kob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF650_09330 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kob03019
]
HF650_09330 (rne)
03009 Ribosome biogenesis [BR:
kob03009
]
HF650_09330 (rne)
Enzymes [BR:
kob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HF650_09330 (rne)
Messenger RNA biogenesis [BR:
kob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HF650_09330 (rne)
Ribosome biogenesis [BR:
kob03009
]
Prokaryotic type
rRNA processing factors
HF650_09330 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QNQ19945
LinkDB
All DBs
Position
complement(1972897..1976142)
Genome browser
AA seq
1081 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMALPSEEEYAERKLPEQPALATFVMPDVPPV
PQAQEPVPAAQAQPAATSTAAPGLFGRIVSALKNLFAGEEAPAPVEVKEEKKEAKPERTQ
ERRKPRQNNRRDRNDRRDSRSEGNEGREGRESRDNRDNREGRESREGREDNRRNRREKPQ
QNAENREPRQNTVTDESDKAKTRDEQQPSRRERNRRRGDDKRQAQQEVKELNREELPAQE
TEQEERVQVMPRRKQRQLSQKVRIDDNRAETVVDETVVESAPEQQHTQVAKLDLPAVAEN
APVHEQEENGEARENTMPRRSRRSPRHLRVSGQRRRRYRDERYPVQSAMPLTVACASPEM
ASGKVWVRYPVPRAQEEQQEIQHTSALETEQQHAPEHEVAPAVAEAQLVTAAQADVVEPQ
APVEAAPVSEQPEVVEPQAAVAEPAPVEVETTHPEAISAPVDEQPQLIAEEDRPVAEQVV
EEAEPVKEEAASAPAEEEVAPAKVEAPVPAQAEAPAAAKAEAPAPVKAEAPAPVKADAPV
VVHAHATAPMTKAPAPAYVQEAPRHSDWVRPAFNFDGKGSAGGHSATHTATAPATKPPAV
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcacttgttgat
gggcaacgtctgtacgacctggatatcgaaagccccgggcatgaacagaaaaaagccaat
atctacaaaggtaaaattacccgcattgaaccgagccttgaagctgccttcgttgactac
ggcgctgaacgtcacggtttcctccccctcaaagagatcgcccgcgaatacttccccgcc
aactacaacgcgcatggccgtccgaacatcaaagatgtgctgcgtgaaggccaggaagtt
atcgtccagattgacaaagaagagcgcggcaacaaaggcgcagcgctgaccacctttatc
agcctcgccggtagttacctcgttctgatgccgaataacccgcgggcgggcggcatctct
cgccgtatcgaaggcgacgaccgtaccgagctgaaagaggcgctgtctagccttgaactg
ccggatggcatgggtcttatcgtgcgtaccgcaggcgtcggcaaatctgccgaagcgctg
cagtgggatctcagcttccgcctgaaacactgggaagcgatccagaaagccgcagagagc
cgcccggctcccttcctgattcatcaggagagcaacgttatcgttcgcgccttccgcgac
tatctgcgccaggacattggtgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcatatcgctgcgctgggccgtccggatttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccactatcagattgagtcgcaaatcgaatccgccttccag
cgtgaagtgcgtctgccgtccggcggctcgattgttatcgacagcactgaagcgctgacc
gccatcgatatcaactccgctcgcgcaacccgcggcggcgatattgaagagacggcgttt
aataccaacctcgaagcggcagatgagattgctcgccagctgcgtctgcgcgacctcggc
ggcctgatcgttatcgactttatcgatatgaccccagtccgccaccagcgcgcggttgaa
aaccgtctgcgtgaagcggtacgtcaggatcgcgcgcgtattcagatcagccatatctcc
cgcttcggcctgctggagatgtcccgccagcgtcttagcccgtcgctgggtgagtccagc
catcacgtctgcccgcgctgtagcggtacgggtaccatccgtgacaacgaatccctgtcg
ctctccattctgcgtctgattgaagaagaagcgctgaaagagaacacccaggaagtgcac
gctattgtgccggtgcctgttgcctcttacctgctgaacgaaaaacgtgccgccgtcagc
gctatcgaagcccgtcagggcggcgtgcgctgcgtcatcgtgccgaacgatcagatggaa
acgccgcactactcggtgctgcgcgtccgtaaaggcgaagagacgccaaccctcagctac
ctgctgccgaagctgcatgaagaggagatggcgctgccatccgaagaggagtatgccgag
cgtaaactgcctgagcagcctgccctcgcaacctttgtgatgccggacgtgccgcctgtg
ccgcaagcccaggagcctgtacccgcagcccaggcacagcctgccgccacctcaaccgca
gcaccgggtctgtttggccgcatcgtctctgccctgaaaaacctcttcgctggcgaagaa
gcgcctgcgccggttgaagtgaaggaagagaagaaagaggcgaaacctgagcgtacgcag
gagcgccgtaaaccgcgtcaaaacaaccgtcgcgaccgtaacgatcgccgtgactcccgt
agcgaaggcaacgaggggcgtgaaggtcgcgaaagccgcgataatcgtgataaccgcgag
ggtcgtgagagccgcgaaggtcgcgaagataaccgccgtaaccgccgcgaaaaaccgcag
cagaacgcggaaaatcgcgagccacgccagaacaccgtcacagacgagtcggataaagcg
aaaacccgcgacgagcagcagccgtcgcgtcgtgaacgcaaccgtcgccgtggcgatgat
aagcgtcaggcgcagcaggaagtcaaagagctgaaccgcgaagagctgccagctcaggag
acggaacaggaagagcgtgttcaggtaatgccgcgccgcaaacagcgtcagctgagccag
aaagtacgcatcgatgataaccgtgctgaaaccgtggtcgacgaaaccgtcgtggagagc
gcaccggagcagcagcatactcaggtggcgaaactcgatctgccagctgtggctgaaaac
gcgccggttcatgagcaggaagagaacggcgaagcgcgtgaaaacaccatgccgcgccgc
tcacgccgctccccgcgtcacctgcgcgtcagcggtcaacgccgccgtcgctaccgtgac
gagcgctacccggtacagtccgcaatgccgctgaccgttgcctgcgcctcgccggagatg
gcttccggtaaagtatgggttcgctatccggtgccacgtgcgcaggaagagcagcaagag
atccagcacactagcgcgctggaaaccgagcagcagcatgcaccagagcatgaagttgcc
cctgccgtagcggaagcacagctggtcaccgccgcgcaggctgatgttgttgagccgcag
gctccggttgaagccgcgcctgttagcgagcagccagaagtggttgaaccgcaggcagcg
gttgcagagccagcgccggtcgaggttgaaacgacccatccggaagcgatctctgccccg
gtagacgaacagccacagctgattgctgaagaagatcgccctgttgcagagcaggttgtc
gaagaggccgagccagtgaaggaagaggctgcgtctgcaccggctgaggaagaagttgcg
ccggcgaaagttgaagcgcctgttccagcgcaagccgaagcccctgctgcggcgaaagct
gaagcgcctgcgccggtgaaagctgaagcgcctgcgccggtgaaagccgacgcaccggta
gttgtacacgcccatgcaaccgcgccgatgaccaaagcgcctgcccctgcgtatgtacag
gaagcaccgcgccacagcgattgggttcgcccggcgttcaacttcgatggtaaaggttct
gcgggcggccacagcgccacgcataccgccaccgcgccggccactaagccgccagcagtc
gagtaa
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