Kosakonia sp. SMBL-WEM22: HF650_12125
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Entry
HF650_12125 CDS
T08549
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
kob
Kosakonia sp. SMBL-WEM22
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kob03016
]
HF650_12125
Enzymes [BR:
kob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HF650_12125
Transfer RNA biogenesis [BR:
kob03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HF650_12125
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
QNQ22746
UniProt:
A0A7H0MKD5
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Position
2560376..2562310
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AA seq
644 aa
AA seq
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MLQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
VAVIHTEKERESAEPETLVEPFLTRFVGKVHKKDDRLSIVPDHPLLKDSIPCRAARGVEH
DFKEGDWAVAEMRRHPLKGDRGFYAELTQFITFSDDHFVPWWVTLARHNLEKEAPNGVAT
EMLDDGLQRVDLTALDFVTIDSASTEDMDDALYAEELADGKLQLTVAIADPTAWIAEGSK
LDDAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALVCRMTLDSDGTIEENIEF
FAATIESKAKLAYDDVSDWLENSGEWQPVNDAIASQIHLLKRACDLRSQWRQTHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHLGFD
PANSEQLVAMLKTHGIEVNAEEVLTLKGFCKLRRELDAQPSGFLDSRIRRFQSFAEISIN
PGPHFGLGLDAYATWTSPIRKYGDMVNHRLLKAIIKGDTPVRPQDETTVQMAERRRLNRM
AERDVGDWLYARFLQDKAGTETRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFIHAVRDE
LVCSQESGTVQIKGEVVFKVTDVIDVTIAEVRMETRSVIARPVM
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgctccaggataacccgctgctcgcgcagcttaaacagcagctccactctcagacaccg
cgtgcagaaggtgttgttaaaggcaccgaaaaaggcttcggatttctggaagtcgatgct
caaaaaagctatttcatcccgccgccgcagatgaaaaaagtgatgcacggcgatcgcatt
gttgccgttattcacacggaaaaagagcgcgaaagcgcggagccggaaacgctggttgaa
cctttcctcacccgtttcgtgggcaaagtgcacaagaaagatgaccgcctgtcgattgtg
ccggatcatcctttactcaaagactccatcccctgtcgcgcagcgcgcggcgtggagcat
gattttaaagagggtgactgggcggttgccgagatgcgccgtcacccgctgaaaggcgat
cgcggcttctacgcggaactcacgcaatttatcaccttctccgacgaccactttgtgccg
tggtgggtgacgcttgcccgtcacaacctcgagaaagaggcaccgaacggcgtggcgact
gagatgcttgatgatggcctgcagcgcgtggatttgaccgcgcttgatttcgtcaccatc
gacagcgccagcaccgaagatatggatgatgcgctctacgccgaagagctggccgatggc
aagctgcagctgaccgtggcgattgccgatcctaccgcatggattgctgaaggcagcaag
cttgacgatgccgcgaaaattcgcgccttcaccaactacctgccgggcttcaacattccg
atgctgccgcgcgaactctctgacgatctttgctctctgcgcgctaacgaagtgcgtccg
gcgctggtctgccgcatgacgctggacagcgatggcaccattgaagagaacattgagttt
ttcgccgccaccatcgaatcaaaagccaaactggcctatgacgatgtctctgactggctg
gaaaatagcggtgagtggcagcctgttaatgacgccatcgcctcgcagattcatctactg
aaacgtgcctgtgatttacgtagccagtggcgccagacccatgcattggtgtttaaagat
cgcccggattaccgctttgtactgggtgaaaaaggcgaagtgctcgatatcgttgccgaa
ccgcgccgcatcgccaatcgcattgttgaagagtcgatgattgccgccaacatttgcgcc
gcgcgcgtgctgcgtgacaagctgggctttggtatctataacgtccatttaggtttcgac
ccggcgaacagcgagcagctggtggcaatgctgaaaacccacggcattgaagtaaacgct
gaagaggtgctgacgctgaaaggcttctgtaagctgcgccgtgaactcgacgcgcagcct
tccggcttcctcgatagccgcattcgccgcttccagtctttcgccgaaatcagcattaat
ccaggcccccacttcggtctgggcctggatgcttacgcgacctggacctcgccgatccgt
aagtatggcgatatggtcaaccaccgcctgctaaaagcgatcatcaaaggtgacaccccg
gtacgtccgcaggatgagaccaccgtgcagatggcggaacgccgtcgcctgaaccgcatg
gccgagcgcgatgtcggcgactggctgtatgcccgtttcctgcaggataaagccggcacc
gaaacccgttttgcagcagagatcattgatgtcagccgcggcggcatgcgcgttcgtctg
gtggataacggtgcggtcgcctttatcccagccccgtttattcatgccgtgcgtgatgag
ctggtgtgcagccaggagagcggcaccgtgcagatcaaaggcgaagtcgtgtttaaagtg
acggatgttattgatgtcaccatcgccgaagtgcggatggaaacccgcagcgtgatcgcc
cgtccggtgatgtaa
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