Kosakonia sp. SMBL-WEM22: HF650_13305
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Entry
HF650_13305 CDS
T08549
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
kob
Kosakonia sp. SMBL-WEM22
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kob03016
]
HF650_13305 (rnd)
Enzymes [BR:
kob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HF650_13305 (rnd)
Transfer RNA biogenesis [BR:
kob03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HF650_13305 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QNQ20667
UniProt:
A0A7H0MEF6
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Position
complement(2800049..2801164)
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AA seq
371 aa
AA seq
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MITTNDALAAICESASAFPAIALDTEFVRTRTYYPQLGLLQMYDGERVTLIDPLTITDWK
PFRDLLTNSAITKYLHAGSEDLEVFLNTFGVQPQPMIDTQILAAFCGRPMSWGFASMVEE
FTGTVIDKSESRTDWLARPLTERQCDYAAADVWYLLPIAGKLLAETEQAGRLAAALDECR
LMMQRRQEVLAPDEAWREITNAWQLRPRQLACLQLLASWRLRKARERDMAVNFVVREENL
WAVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVAQAQELPEASLPEPLRNLMDMPGYR
KAFKAIKALVQTISESENISVELLASRRQINQLLNWHWKLKTQTSLPELISGWRGELMAD
RLNALLAEYPQ
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgataacgacgaacgacgcgctggcagccatatgtgaatctgccagtgcatttccagcc
attgccctcgatacggaatttgtccgcacccgcacttactacccgcaattgggtctgctg
cagatgtatgacggcgagcgtgtcacgcttatcgatccgctgactattaccgactggaag
ccgtttcgcgacctgctcaccaatagtgcgatcaccaagtatctgcacgcgggaagcgaa
gatctggaagtgttcctcaatacgtttggtgtacagccacagccgatgattgatacgcag
atcctcgcggcattctgcggtcgtccgatgtcatggggctttgcctcaatggtagaggag
tttaccgggacggtgattgataaaagcgaatcccgcaccgactggctggcgcgtccgctt
accgagcgtcaatgtgactatgcggcggcggatgtctggtacctgttgcctatcgcaggg
aaactgctggcagagaccgagcaggcgggcagactggctgccgcgctcgacgagtgtcgt
ttaatgatgcagcgccgccaggaggtgctggcaccggatgaagcatggcgtgaaatcacc
aatgcctggcagctgcgcccgcgccagctggcctgtttgcaactgctggcctcatggcgt
ctgcgcaaggcgcgcgagcgcgacatggccgtcaactttgtggtgcgcgaagagaatctc
tgggcagttgcgcgctacatgccaggcagcctcggcgagctggatagcctcggtctttca
ggtagtgaaatccgtttccacggtaaaaccttgctggcgctggtcgcgcaggcgcaggag
ttgccggaagcgtcactgccagagccgctgcgtaatctgatggacatgcccggctatcgc
aaagcgtttaaagcgattaaagcgctggtccagacaatcagtgaaagtgaaaatattagc
gtagagttgctggcatcgcgtcggcagattaatcagttattaaactggcactggaaactg
aaaacgcaaaccagcctgccggaattaattagcggctggcgcggtgaattgatggccgat
cgactcaatgcgttattagcagagtatccgcaataa
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