Kosakonia sp. SMBL-WEM22: HF650_20705
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Entry
HF650_20705 CDS
T08549
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kob
Kosakonia sp. SMBL-WEM22
Pathway
kob02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HF650_20705 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kob03021
]
HF650_20705 (rpoD)
Transcription machinery [BR:
kob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF650_20705 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
QNQ21964
LinkDB
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Position
4309102..4310943
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AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEQARLSDLITGFVDPNAEEDMAPTA
THVGSELSSEEMDDDEDEEEDDDDDSDDDNSIDPELAREKFAELRTQYELTRDTIKAKGR
SHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPKK
NFITLFTGNETSETWFNAALAMNKPWSEKLKDVTEEVQRGLMKLQQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESL
RAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgttacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcatccaggtgatggaagaagcgccg
gatgctgatgatctgttgctggctgaaaactccaacaacacagacgaagatgctgaagaa
gccgctgcacaggttctgtccagcgtagagtctgaaatcggacgaactaccgacccggtg
cgcatgtacatgcgcgaaatgggcaccgttgaactgctgacccgtgaaggcgaaattgac
atcgccaaacgtattgaagacgggatcaaccaggttcagtgctccgttgccgagtatccg
gaagccattacctacctgctggagcaatacgaccgtgttgaagcagagcaggctcgtctc
tccgatctgatcaccggtttcgtcgatcctaacgccgaagaagatatggcgccaacggcg
acccacgtcggctctgagctctccagcgaagagatggacgatgatgaagatgaagaagaa
gacgacgatgacgacagcgacgatgacaacagcatcgatcctgagctggcgcgtgagaaa
ttcgctgagctgcgcacgcaatacgagctgactcgcgatacgatcaaagcaaaaggacgc
agccacgctgccgcacaggaagagatcctcaagctgtctgaagtcttcaaacagttccgt
ctggtgccaaaacagttcgactacctggtcaacagcatgcgcgtgatgatggatcgcgta
cgtacccaggaacgcatcatcatgaagctgtgcgttgaacagtgcaaaatgccgaagaaa
aacttcatcaccctcttcaccggcaatgaaaccagcgaaacctggttcaacgccgcgctg
gccatgaacaaaccgtggtctgagaagctgaaagatgtgactgaagaagtgcaacgcggc
ctgatgaagctgcagcagattgaagaagagaccggcctgacgattgagcaggttaaagat
atcaaccgtcgtatgtctatcggcgaagcgaaagcgcgtcgtgcgaagaaagagatggta
gaagcaaacttgcgtctggttatctctatcgccaagaaatataccaaccgcggtctgcag
ttcctcgatctgattcaggaagggaacatcggcctgatgaaagcggttgataagttcgag
tatcgccgtggttataagttctccacctacgcaacctggtggatccgtcaggcgatcacc
cgctctatcgcggatcaggcgcgtacgatccgtattccggtgcatatgattgagacgatc
aacaagctcaaccgtatctctcgccagatgctgcaggagatgggccgcgagccgacaccg
gaagagctggctgagcgtatgctgatgccggaagataagatccgcaaagtactgaaaatt
gctaaagagccaatctccatggaaacgccgattggcgatgatgaagattcgcatctgggt
gattttatcgaggataccaccctcgagctgccgctggactcggcgaccaccgagagcctg
cgcgctgccacgcacgatgtgctggctggccttaccgcccgtgaagcgaaggtgctgcgt
atgcgtttcggtatcgacatgaataccgaccatacgctggaagaggtgggtaaacagttc
gacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgcaaactgcgccac
ccgagccgctctgaagtgctgcgtagcttcctcgacgattaa
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