Kosakonia sp. SMBL-WEM22: HF650_21060
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Entry
HF650_21060 CDS
T08549
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kob
Kosakonia sp. SMBL-WEM22
Pathway
kob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF650_21060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kob03019
]
HF650_21060
03009 Ribosome biogenesis [BR:
kob03009
]
HF650_21060
Enzymes [BR:
kob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF650_21060
Messenger RNA biogenesis [BR:
kob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF650_21060
Ribosome biogenesis [BR:
kob03009
]
Prokaryotic type
rRNA helicases
HF650_21060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNQ22025
LinkDB
All DBs
Position
complement(4382432..4384324)
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AA seq
630 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEEEMDI
ETLAAALLKMAQGERPLILPPDAPMRPKREFRERDDRFERRGDRNDRGPRSDRGGEDRPR
RERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGM
PGEVLQHFTRTRILNKPMNMQLLGDAQPRERSERRPGGERRSFGGGERREGGRGPRRDGA
APAGAGRFSGERRENRGPRREEGTTRRRDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctcggttacgaaaaaccatctccgatccaggctgagtgcattccgcacctg
ctgagcggtcgtgacgtgctgggcatggcccagactggtagcgggaaaaccgcagcgttt
tctctgccgctgcttaataacatcgatccggacctgcgtgcgccgcagatcctcgtgctt
gctccgacccgcgaactggcggttcaggtagctgaagcgatgaccgatttctctaaacac
atgcacggtgtgaacgtggttgccctgtacggcggccagcgttatgacgtgcaattacgc
gccctgcgtcagggcccgcagatcgttgtcggtacgccgggacgcctgctggatcacctg
aaacgcggcactctggacctctccaaactgagcggtctggtgctggatgaagcagatgaa
atgctgcgcatgggctttatcgaagacgtagaaactatcatggcgcagatcccggaaggt
catcagaccgctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtccagcgtgacaacccgcccggacatc
agccagagctactggtctgtctacggcatgcgtaaaaacgaagcgctggttcgcttcctt
gaagctgaagattttgatgccgcgatcatcttcgtgcgcaccaaaaacgcgactctggaa
gtggctgaagcgctggagcgcaacggttacaacagcgccgcgctgaacggtgacatgaac
caggccctgcgtgagcagactctggagcgtctgaaagatggtcgtctggacatcctgatt
gcaaccgacgttgcggcccgtggcctggacgttgaacgcatcagcctggttgttaactac
gacatcccgatggactctgagtcttatgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgcgccctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gagcgtacgatgaagctgaccattcctgaagtagagctgccgaacgcagagctgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctc
gatcagtaccgcgcgctgctggcgaaaattcagccctctgctgaagaagagatggatatc
gaaacgctggctgccgcactgctgaaaatggcccagggcgaacgtccgctgatcctgccg
ccggatgcaccgatgcgtcctaagcgtgagttccgcgagcgtgatgatcgtttcgaacgc
cgtggcgatcgcaacgaccgtggcccgcgcagcgatcgtggcggtgaagaccgtccgcgt
cgtgagcgtcgcgatgtgggtgatatggagctgtaccgcattgaagtgggccgtgatgac
ggtgttgaagttcgtcatatcgtgggcgcaatcgccaacgaaggcgacatcagcagccgc
tacatcggtaacatcaagctgttcggttcccactccaccatcgagctgccgaaaggcatg
ccgggcgaggttctgcagcactttacccgcacgcgtattctcaacaaaccgatgaatatg
cagctgctgggcgatgcacagccgcgtgagcgcagcgaacgccgtcctggcggcgagcgt
cgtagctttggcggcggcgagcgtcgtgaaggcggtcgcggtccgcgtcgtgatggtgca
gcaccggctggtgcaggccgtttcagcggtgagcgtcgtgaaaaccgtggcccgcgccgc
gaagaaggcacaacccgtcgtcgtgacgcgtaa
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