KEGG   Kosakonia sp. SMBL-WEM22: HF650_21265
Entry
HF650_21265       CDS       T08549                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
kob  Kosakonia sp. SMBL-WEM22
Pathway
kob02020  Two-component system
kob02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:kob00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    HF650_21265 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    HF650_21265 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:kob03021]
    HF650_21265 (rpoN)
Transcription machinery [BR:kob03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     HF650_21265 (rpoN)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID
Other DBs
NCBI-ProteinID: QNQ22063
LinkDB
Position
4421336..4422769
AA seq 477 aa
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHEEVDSEQ
VQEKDGLDTADALEQKEMPDELPLDASWDEIYTAGTPSGSSNDYIDDELPIYQGETTQSL
QDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVTLAEILESMGNDEIGMDEVEAVLK
RVQRFDPVGVAARDLRDCLLVQLSQFAKATPWCEEARLIICDHLDLLANHDFRSLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLKIN
QQYAAMGSGGRNDADTQFIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq 1434 nt   +upstreamnt  +downstreamnt
atgaagcaaggtttgcaactacggcttagccaacagctagccatgacgccacaactgcaa
caggccattcgtcttttgcagttgtccacgttggaacttcagcaggaacttcagcaggcg
ctggagagcaacccactgttggaacaaaccgatcttcacgaagaagtggatagcgaacag
gttcaggaaaaagatggcctggacactgcggatgcactcgaacagaaagagatgcccgat
gaactgccgctggatgccagctgggatgagatctacaccgctggcaccccgtcaggcagc
agtaatgattacattgatgatgaactgccgatctaccagggcgaaactacccagtcgcta
caggattacctgatgtggcaggttgagctgacccccttctccgatacggatcgcgccatt
gcgacgtcgatcgttgatgccgtcgacgaaactggctatctcaccgtgacgcttgcggag
atcctcgagagcatggggaatgacgagattggcatggatgaggtcgaagcggtgctaaag
cgcgttcagcgtttcgatcctgttggcgttgcagcgcgggacctgcgcgactgcctgctg
gttcaactctcccagttcgcgaaagcgacgccgtggtgcgaagaggcccggcttatcatc
tgcgatcatctcgatctgctggccaatcatgactttcgctcgttgatgcgcgtcacgcgc
ctaaaagaggatgtgcttaaagaggcggtcaatctgatccagtctctcgatccgcgtcct
ggccagtcgatccagaccagcgagccggagtatgtgatccccgatgtactggtgcgcaaa
cacaatgggcgctgggtagtggaactcaacgccgacagcattccacgccttaagatcaac
cagcagtatgcagcgatgggcagcggcggacgcaacgacgccgacacgcagttcattcgc
agtaatttgcaggaagcgaagtggttgatcaaaagtctggagagccgcaacgacacgctg
ctgcgcgtcagccgctgcatcgtcgagcagcagcaggctttctttgagcagggcgaagaa
tttatgaaaccgatggtgctggcagatatcgcccaggccgtcgagatgcacgagtccact
atctctcgtgttaccacccagaagtacctgcacagtcctcgcggcatttttgaactgaag
tatttcttctccagccatgttaataccgaaggcggcggcgaagcttcctccacggccatt
cgcgcactggttaagaagttaatcgccgcggaaaaccctgcaaaaccactgagcgacagt
aagctgacgaccctgctctccgatcaggggatcatggtcgcgcggcgaaccgttgcgaag
tatcgagaatctttatccattccgccgtctaaccagcgtaaacagctggtgtga

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