Kosakonia sp. SMBL-WEM22: HF650_21265
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Entry
HF650_21265 CDS
T08549
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
kob
Kosakonia sp. SMBL-WEM22
Pathway
kob02020
Two-component system
kob02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kob00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HF650_21265 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HF650_21265 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kob03021
]
HF650_21265 (rpoN)
Transcription machinery [BR:
kob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HF650_21265 (rpoN)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QNQ22063
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All DBs
Position
4421336..4422769
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AA seq
477 aa
AA seq
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MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHEEVDSEQ
VQEKDGLDTADALEQKEMPDELPLDASWDEIYTAGTPSGSSNDYIDDELPIYQGETTQSL
QDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVTLAEILESMGNDEIGMDEVEAVLK
RVQRFDPVGVAARDLRDCLLVQLSQFAKATPWCEEARLIICDHLDLLANHDFRSLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLKIN
QQYAAMGSGGRNDADTQFIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE
FMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI
RALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtttgcaactacggcttagccaacagctagccatgacgccacaactgcaa
caggccattcgtcttttgcagttgtccacgttggaacttcagcaggaacttcagcaggcg
ctggagagcaacccactgttggaacaaaccgatcttcacgaagaagtggatagcgaacag
gttcaggaaaaagatggcctggacactgcggatgcactcgaacagaaagagatgcccgat
gaactgccgctggatgccagctgggatgagatctacaccgctggcaccccgtcaggcagc
agtaatgattacattgatgatgaactgccgatctaccagggcgaaactacccagtcgcta
caggattacctgatgtggcaggttgagctgacccccttctccgatacggatcgcgccatt
gcgacgtcgatcgttgatgccgtcgacgaaactggctatctcaccgtgacgcttgcggag
atcctcgagagcatggggaatgacgagattggcatggatgaggtcgaagcggtgctaaag
cgcgttcagcgtttcgatcctgttggcgttgcagcgcgggacctgcgcgactgcctgctg
gttcaactctcccagttcgcgaaagcgacgccgtggtgcgaagaggcccggcttatcatc
tgcgatcatctcgatctgctggccaatcatgactttcgctcgttgatgcgcgtcacgcgc
ctaaaagaggatgtgcttaaagaggcggtcaatctgatccagtctctcgatccgcgtcct
ggccagtcgatccagaccagcgagccggagtatgtgatccccgatgtactggtgcgcaaa
cacaatgggcgctgggtagtggaactcaacgccgacagcattccacgccttaagatcaac
cagcagtatgcagcgatgggcagcggcggacgcaacgacgccgacacgcagttcattcgc
agtaatttgcaggaagcgaagtggttgatcaaaagtctggagagccgcaacgacacgctg
ctgcgcgtcagccgctgcatcgtcgagcagcagcaggctttctttgagcagggcgaagaa
tttatgaaaccgatggtgctggcagatatcgcccaggccgtcgagatgcacgagtccact
atctctcgtgttaccacccagaagtacctgcacagtcctcgcggcatttttgaactgaag
tatttcttctccagccatgttaataccgaaggcggcggcgaagcttcctccacggccatt
cgcgcactggttaagaagttaatcgccgcggaaaaccctgcaaaaccactgagcgacagt
aagctgacgaccctgctctccgatcaggggatcatggtcgcgcggcgaaccgttgcgaag
tatcgagaatctttatccattccgccgtctaaccagcgtaaacagctggtgtga
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