Klebsiella oxytoca CAV1374: AB185_10180
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Entry
AB185_10180 CDS
T04534
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
koc
Klebsiella oxytoca CAV1374
Pathway
koc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB185_10180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koc03019
]
AB185_10180
03009 Ribosome biogenesis [BR:
koc03009
]
AB185_10180
Enzymes [BR:
koc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB185_10180
Messenger RNA biogenesis [BR:
koc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB185_10180
Ribosome biogenesis [BR:
koc03009
]
Prokaryotic type
rRNA helicases
AB185_10180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKL34239
LinkDB
All DBs
Position
1041334..1043295
Genome browser
AA seq
653 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
VETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERSGE
DRPKRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGGERREGGRSFGGGERRE
GRGFGGERREGGRGEGRRFSGERREGGRAPRRDDASAPRRDDSAGRRRFGGDA
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagcg
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctg
ctgggcggccgcgacgttctgggtatggcccagacgggtagcggtaaaaccgcagcgttc
tctttaccgctgctgaacaacatcgatcctgagctgagagcaccgcagattctggtgctg
gcgccgacccgcgaactggcggtacaggttgctgaagcaatgacggaattctctaaacat
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcagctgcgc
gcgctgcgtcaggggccgcaaatcgttgtcggtaccccgggtcgtctgctggaccacctg
aaacgcggtacgctggatctctctaagctgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgtagaaaccattatggcgcagatcccggagggt
catcagaccgctctgttctctgccaccatgccggaagccattcgccgtattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtcgagcgtaacaactcgcccggacatc
agccagagctactggactgcttacggtatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggccgaagcgctggagcgtagcggttatagcagcgctgcgctgaacggcgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagacggtcgtctggatatcctgatt
gcaaccgacgttgcggcccgtggcttggacgttgagcgtatcagcctggtggttaactac
gatatcccgatggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaatatc
gaacgtacgatgaagctgaccattccggaagttgaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaattcgcggcgaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgccgaaggcgaagagctggac
gtggaaacgctggccgccgcgctgctgaaaatggctcagggcgaacgtccgctgatcctg
ccgccggatgcgcctatgcgtcctaagcgcgagttccgcgaccgtgacgatcgtttcgaa
cgtcgcggcgaccgtaacgaccgtggcccgcgcggcgaccgtccggaacgcagcggcgaa
gatcgtccgaagcgtgagcgtcgtgacgttggcgatatggaactgtaccgtattgaagtg
ggccgtgatgacggcgttgaagttcgtcacatcgttggcgcaattgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgtttggttctcactccaccatcgaactg
ccgaaaggcatgccgggcgaagtgctgcagcactttacgcgtacccgcatcctgaacaag
ccgatgaacatgcagctgctgggcgatgctcagccgcgtcctgaacgcagcggcgaacgt
cgtggcggcggcgagcgtcgtgaaggcggtcgtagcttcggcggtggtgaacgtcgtgaa
ggccgtggtttcggcggtgagcgtcgcgaaggcggccgtggtgaaggtcgtcgtttcagc
ggcgaacgtcgtgaaggtggccgcgcgccgcgccgcgatgatgcttcagctccgcgtcgc
gatgactccgcaggtcgtcgtcgtttcggtggcgatgcataa
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