Kocuria sp. KD4: HBK84_00515
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Entry
HBK84_00515 CDS
T06521
Symbol
pdxS
Name
(GenBank) pyridoxal 5'-phosphate synthase lyase subunit PdxS
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
kod
Kocuria sp. KD4
Pathway
kod00750
Vitamin B6 metabolism
kod01100
Metabolic pathways
kod01240
Biosynthesis of cofactors
Module
kod_M00916
Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
HBK84_00515 (pdxS)
Enzymes [BR:
kod01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
HBK84_00515 (pdxS)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SOR_SNZ
ThiG
Dus
NMO
His_biosynth
TetR_C_27
IGPS
Glu_synthase
OMPdecase
NanE
Trp_syntA
TMP-TENI
DHO_dh
Motif
Other DBs
NCBI-ProteinID:
QIR68752
LinkDB
All DBs
Position
complement(123813..124742)
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AA seq
309 aa
AA seq
DB search
MTETLQTSAQDPTPVTGSRLVKRGLADMLKGGVIMDVVTAEQARIAEDSGAVAVMALERV
PADIRSQGGVARMSDPDLIEQIIDSVSIPVMAKARIGHFVEAQVLEHLKVDYIDESEVLS
PADYVNHIDKHRFNVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEATKHIRTIR
AQIAELQGLYTSTPDALYVKAKELSAPYELVAEVARTGKLPVVLFTAGGIATPADAAMMM
QLGADGVFVGSGIFKSGNPAERARAIVAATAYYDDPTRIAEASRGLGEAMVGINVADLPA
PHRLAERGW
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaccttgcagacctccgcccaggaccccacccccgtgaccggatcgcgcctc
gtcaagcgcggcctggccgacatgctcaagggcggtgtgatcatggacgtggtcaccgct
gagcaggcccggatcgccgaggactccggagccgtggctgtgatggcgctcgagcgcgtt
cccgcggacatccgctcccagggtggcgtggcgcgcatgagtgatcccgatctgatcgag
cagatcatcgactcggtgtccatccccgtgatggccaaggcgcggatcgggcacttcgtg
gaggcccaggtgctcgagcacctcaaggtggactacatcgacgagtccgaggtgctctcc
cccgccgattacgtcaaccacatcgacaagcaccgcttcaacgtcccgttcgtgtgcggt
gcgaccaacctgggtgaggcgctgcgccggatcaccgagggcgcggccatgatccgctcc
aagggcgaggccggaacgggggacgtctccgaggccaccaagcacatccgcaccattcgc
gcccagatcgccgagctgcagggcctctacacctccaccccggacgccctctacgtcaag
gccaaggaactgtccgcgccgtacgagctggtggcggaggtcgcccgcacgggcaagctc
cccgtggtgctgttcaccgccggggggatcgcgacccccgcggacgccgccatgatgatg
cagctcggtgcggacggcgtgttcgtgggctcgggcatcttcaagtccggcaaccccgcc
gagcgcgcccgcgccatcgtggccgcgaccgcctactacgacgatcccacccgcatcgca
gaggcctcccgcggcctgggcgaggccatggtcggcatcaacgtggcggacctgcccgca
ccccaccgcctcgcggagcgcggttggtga
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