Kocuria sp. KD4: HBK84_00785
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Entry
HBK84_00785 CDS
T06521
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
kod
Kocuria sp. KD4
Pathway
kod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HBK84_00785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kod03400
]
HBK84_00785
DNA repair and recombination proteins [BR:
kod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBK84_00785
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HBK84_00785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
SMC_N
DnaJ_CXXCXGXG
nSTAND1
AAA_29
AAA_16
RsgA_GTPase
DUF4350
Motif
Other DBs
NCBI-ProteinID:
QIR68798
LinkDB
All DBs
Position
complement(178174..180837)
Genome browser
AA seq
887 aa
AA seq
DB search
MTTEQHGTASWQHGVVVRGARQNNLRDVSLDLPRDSIVVFTGVSGSGKSSLAFGTLFAES
QRRYLESVAPYARRLIDQAGVPDVDVIEGLPPAVALQQQRGGGGARSDVATVTTLSSLVR
MLYSRAGWYPPEQAMLYAEDFSANTVQGACPTCHGIGRVYEVTEDTMVPDPSLTIRERAV
ASWPVAWAGQNQRDILVSLGYDVDTPWKDLPKKDRDWILYTEDRPTVGVYRGLTPNQTRK
AQEEGVEATYQGTFIGARRYVLDTFANAKSPSTKKRAAQYLTSELCPECHGKKIKHESLS
VTFEGLDIAEFSHLPLARVAEIARSVTAEDWTPGEAQHMEDHVLDAEARAASTASRVAEG
GASHDAAPDVRRTPNLSVEKRAAAQRLAADLVARLQPMIDLGLGYLSLDRTTPTLSGGER
QRLRLATQLSSQLFGVVYVLDEPSAGLHPRDLDALIGILHGLKDRGNSLFVVEHSLTVIH
EADWLVDIGPDAGERGGRVLYSGKPGGLADVPESATRRYLFAEHAPSAVAREPRTPQGWL
QLEGVTRNNLRGLDVSLPAGCLTAVTGISGSGKSSLVSQALPVLVRERLGHGGPEDTEIT
GDPESDLLTADDAADDVRGHVVSLPGSVRRVVVIDQKPIGRTPRSNVATYTGLFDAVRKL
YAATDEAKRRGYKAGRFSFNVAGGRCPTCEGEGSVMVELLFLPSIYAPCPDCHGTRYKAE
TLEVLWRERSVADVLAMSVDEAHTFFEGEDAVHHTLGVLRDVGLGYLRLGQPATELSGGE
AQRVKLASELQRASRGDTLYVLDEPTAGLHPADSDRLMNHLQGLADAGNTVVMAELDMRM
VAQADHVIDMGPGAGSDGGRVVVAGTPADVAAHPDSATAPYLRAVLG
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
gtgactactgaacagcacggcaccgcatcctggcagcacggcgtggtggtgcgcggcgcg
cgccagaacaacctccgggacgtctccctggacctgccccgggactccatcgtggtgttc
acgggggtgtccggctcggggaagtcgtccctcgcgttcggcacgctgttcgcggagtcg
cagcgacgctacctggagtccgtggcgccgtacgcgcgccggctgatcgaccaggcgggt
gtcccggacgtggacgtgattgaggggctgccgcccgccgtcgccctccagcagcagcgc
ggcgggggcggagcgcgctcggacgtggccaccgtgaccacgctgtcgagcctggtccgg
atgctgtactctcgcgccggttggtacccgccggaacaggccatgctctacgcggaggac
ttctccgcgaacactgtgcagggcgcgtgccccacgtgccacgggatcgggcgggtctac
gaggtcaccgaggacaccatggtcccggacccgtcgctgaccatccgtgagcgcgccgtc
gcctcctggcccgtggcgtgggcggggcagaaccagcgggacatcctggtctccctgggc
tacgacgtggacaccccttggaaggacctgccgaagaaggaccgggactggattctctac
accgaggaccgccccacggtgggcgtgtaccgcgggctcaccccgaaccagacgcgcaag
gcccaggaggagggtgtggaggccacgtaccagggcacgttcatcggggcgcggcgctac
gtgctggacaccttcgccaacgcgaagagcccgagcaccaagaagcgcgcggcccagtac
ctcacgagcgaactgtgcccggagtgccacggcaagaagatcaagcacgagtccctgtcc
gtgacgttcgagggcttggacatcgcggagttctcgcacctgccgctcgcacgcgtggcg
gagatcgcgcgctcggtgaccgccgaggactggaccccgggtgaggcccagcacatggag
gaccacgtgctcgacgccgaggcccgcgccgcctccaccgcctcgcgggtcgcggagggc
ggtgcctcgcatgacgccgccccggacgtccggcgcaccccgaacctctccgtggagaag
cgggccgccgcgcagcgcctcgccgcggacctcgtggcgcggctgcagcccatgatcgac
ctgggcctgggctacctctccctggaccgcaccacgcccacgctctccggtggtgagcgg
cagcggctgcggctggccacccagctctcctcccagctcttcggggtggtctacgtgttg
gacgagccctccgcaggtctgcacccccgggacctggacgcgctcatcgggatcctgcac
ggactcaaggaccgcggcaacagtctgttcgtggtggagcactccctgaccgtgatccac
gaggcggactggctcgtggacatcggcccggatgccggcgagcgcggcggccgcgtgctc
tacagcggtaagccgggcggtctcgccgacgtgcccgagtccgcgacgcgacgctacctc
ttcgccgagcacgcgccgtcggccgtggcgcgcgagccccgcacgccccaggggtggctg
cagctcgagggcgtcacccgcaacaacctgcgcggcctggacgtgagcctccccgctggg
tgcctcaccgccgtcaccggcatctccggctcgggcaagtccagcctggtcagtcaggcg
ctgccggtgctggtgcgcgagcggctgggccacggcggcccggaggacacggagatcacc
ggggacccggagtcggacctgctgacggccgacgacgccgcggacgacgtgcgcgggcac
gtggtctccctgccggggagcgtgcggcgcgtcgtcgtgatcgaccagaagcccatcggg
cgcaccccgcgctccaacgtggccacctacaccgggctgttcgacgccgtccgcaagctc
tacgccgccacggacgaggcgaaacggcgcggttacaaggccggacggttctcgttcaac
gtggccggcgggcgctgccccacgtgcgagggcgagggcagcgtgatggtggagctgctg
ttcctgccgagcatctacgcaccctgcccggactgccacggcacccgctacaaggccgag
accctggaggtgctgtggcgggagcgctccgtggcggatgtgctggccatgagcgtggac
gaggcgcacacgttcttcgagggcgaggacgccgtccaccacactctgggcgtgctgcgg
gacgtgggactcggctacctgcggctgggccagcccgccaccgagctctccggcggggag
gcgcagcgggtcaagctcgcctccgagctgcagcgggcctcgcgcggggacactctctac
gtgctggacgagcccaccgccggactgcaccccgcggacagcgaccggctcatgaaccac
ctgcaggggctggcagacgcgggcaacacggtggtcatggccgagctggacatgcgcatg
gttgcccaggccgatcacgtgatcgacatgggcccgggtgccggctcggacggcgggcgg
gtggttgtcgcgggcactcccgccgacgtcgcggcgcacccggacagcgccactgcaccg
tacctgcgggccgtgctgggctga
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