Kocuria sp. KD4: HBK84_03055
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Entry
HBK84_03055 CDS
T06521
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kod
Kocuria sp. KD4
Pathway
kod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBK84_03055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kod03019
]
HBK84_03055
03009 Ribosome biogenesis [BR:
kod03009
]
HBK84_03055
Enzymes [BR:
kod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HBK84_03055
Messenger RNA biogenesis [BR:
kod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBK84_03055
Ribosome biogenesis [BR:
kod03009
]
Prokaryotic type
rRNA helicases
HBK84_03055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
GET4
UvrA_inter
Cas3-like_C_2
TcaA_2nd
Motif
Other DBs
NCBI-ProteinID:
QIR70803
LinkDB
All DBs
Position
675803..678076
Genome browser
AA seq
757 aa
AA seq
DB search
MPPKRGSSVSTDSLSQNENPHNETPEHDAAPAVTDAPDNHDVVVDAQRTDSGEATEPADQ
PSEAEQTARDDDAAEPAEQPVENDSAEKRAENGSTEKSADAEKSEPNPPTFAELGVDARV
LAALDEVGYEYPSPIQAATIPALLSGRDVVGLAQTGTGKTAAFAVPALSKLAELSDLHGP
QRSTRVLVLAPTRELALQVAEAFGSYATHLDDFTVLPVYGGSSYGPQLAGLKRGAQVVVG
TPGRVIDHLAKGSLNLDDIAYVVLDEADEMLRMGFSEDVEKILAQTPKEKQVALFSATMP
KAIRRIAQQYLHDPQEITVKAKTTTGSNTRQRYMQVMGPHKLDAMTRVLEVEDYDGVIVF
VRTKAATEEIADKLKARGYTAAAINGDIPQNLRERTVDSLRDGKIDILVATDVAARGLDV
ERISLVVNYDIPHDTESYVHRIGRTGRAGRKGEAILFMTPREKYLLRAIEKATRQPVEQM
RVPSTDEVNQTRKENFAQQIEETIDSEDLSLFRELVKQYESEHDVDAVEVAAALAVIAQN
GRPFLLEDLPELPQRKRDRERRDGDGPRNRRSPGDEAGMKTYKLAVGHRDRVVPGAVVGA
LTHEGGLNGSQIGAIDIRPTFTLVGLPENLPAGTLDKLANTQINGSPIRIQEDRGPGGAR
GGKPFRGGDRDRGPRNDRGGYREDRGPRNDRGGYRGDRGDRGGYREDRGGYQDRGGYRED
RGGYRDDRGGGRSRGGSYQQDRPRRKNRPDNGGYSGR
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
attccaccgaagcgaggttcttccgtgtccactgactccctgtcccagaacgaaaatccc
cacaacgagacccccgagcacgacgccgctcccgccgtgaccgacgcccccgacaaccac
gacgtcgtcgtcgacgcgcagcgcaccgacagcggcgaggcaaccgagcccgccgaccag
ccttccgaagccgagcagaccgcccgggacgacgacgccgccgagccggccgagcagccc
gtcgagaacgactctgccgagaagcgcgccgagaacggctccacggagaagtccgccgac
gccgagaagtccgaaccgaacccgcccacgttcgccgaactgggcgtggacgcgcgcgtg
ctggcggcactggacgaggtgggctacgagtacccctcgcccatccaggccgcgacgatt
cccgcgctgctgagcggccgcgacgtcgtcgggctcgcgcagaccggtacgggcaagacc
gccgcgttcgccgtgcccgcactgtccaagctcgcggagctgtccgacctgcacggcccg
cagcgcagcacgcgcgtgctggtgctcgcgccgacccgcgaactcgcgctgcaggtcgcc
gaggccttcggctcctacgcgacccacctggacgacttcaccgtgctgcccgtgtacggc
ggctcctcgtacggtccgcagctcgcgggcctcaagcgcggcgcgcaggtggtcgtggga
accccggggcgcgtgatcgaccacctggccaagggctcgctcaacctggacgacatcgcg
tacgtggtgttggacgaggcggacgagatgctgcgcatgggcttctccgaggacgtcgag
aagatcctggcgcagacccccaaggagaagcaggtggctctgttctccgccactatgccc
aaggccatccgccggatcgcgcagcagtacctgcacgacccccaggagatcacggtcaag
gccaagaccactacgggcagcaacacccggcagcggtacatgcaggtcatgggcccgcac
aagctggacgccatgacccgcgtgctcgaggtcgaggactacgacggcgtgatcgtcttc
gtgcgtaccaaggccgccacggaggagatcgcggacaagctcaaggcccgcggctacacc
gccgccgcgatcaacggtgacatcccacagaacctgcgcgagcgcaccgtggactcgctg
cgcgacggcaagatcgacatcctcgtggccacggacgttgcagcccgcggtttggacgtc
gagcggatctccctggtggtcaactacgacatcccccacgacaccgagtcctacgtgcac
cgcatcggccgcaccggccgcgcggggcgtaagggtgaggccatcctgttcatgaccccg
cgcgagaagtacctgctgcgcgcgatcgagaaggccacccgccagcccgtcgaacagatg
cgcgtgccctccacggacgaggtcaaccagacccgcaaggagaacttcgcgcagcagatc
gaggagaccatcgactccgaggacctctcgctgttccgtgagctcgtgaagcaatacgag
tccgagcacgacgtcgacgccgtcgaggtcgccgctgcgctcgccgtgatcgcccagaac
ggccgcccgttcctcctggaggacctgcccgagctgccgcagcgcaagcgggaccgcgag
cgccgtgacggcgacggcccccgcaatcgccgttccccgggggacgaggccgggatgaag
acctacaagctggccgtggggcaccgcgatcgggtagtccccggcgccgtggtgggtgcc
ctcacgcacgagggcggtctcaacggttcgcagatcggtgcgatcgacatccgccccacg
ttcacgctcgtgggtctgcccgagaacctccccgcgggaaccctcgacaagctggccaac
acccagatcaacggttcgcccatccggatccaggaggatcgcggacccggtggcgcgcgc
gggggcaagcccttccgcggcggtgaccgtgaccgtggaccccgcaacgaccggggcggg
taccgcgaggatcggggcccgcgcaacgaccgcgggggctaccgcggcgaccgtggtgac
cgcgggggataccgtgaggaccggggcggctaccaggatcgcggtgggtaccgcgaggat
cgtggcggttaccgcgatgatcgcggcggcggccgttcccgtggcgggtcctaccagcag
gaccggccacgtcggaagaaccgcccggacaacggcggctactcgggtcgctga
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