Kocuria sp. KD4: HBK84_04565
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Entry
HBK84_04565 CDS
T06521
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kod
Kocuria sp. KD4
Pathway
kod03420
Nucleotide excision repair
kod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HBK84_04565
03430 Mismatch repair
HBK84_04565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kod03400
]
HBK84_04565
Enzymes [BR:
kod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HBK84_04565
DNA repair and recombination proteins [BR:
kod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBK84_04565
MMR (mismatch excision repair)
Other MMR factors
HBK84_04565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QIR69428
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All DBs
Position
984251..986041
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AA seq
596 aa
AA seq
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MSVEQSAEERILGGLDPEQRVVATTLNGPVCVRAGAGTGKTRAITHRIAWGIASGVYTPQ
KTLALTFTARAANEMRQRLRALGAPGVQARTFHSAALRQLQYFWPQAVGGPPPGLVNHKA
RLITEAAQAMRLTTDRATVRDVAAEIEWAKVSMHTPDTYPQAAGQRDMPAGYDVRTMQRL
YQSYEDLKADRHLIDFEDVLLITVGILEEDERIAAAVHAQYRQFVVDEYQDVSPLQQRLL
DAWLGSRDDLCVVGDASQTIYSFTGATSRHLLEFPSRYPGASVVELIRDYRSTPQVVNTA
NRLLAARRPSLTSTPDTWATPLRLVSQRPAGPEPAWNEYPDDEAEAAGVAVRIQDLIDDG
VAPHEIAVLFRTNGQSQAFEAALADANIGFQLRGSERFFNRPEIRQAIVQIRSAARTAGA
DRADVPQQVRDMLGSLGYTERAPRSDSATRAKWESLRALVSLADTMARRAVADGETLSLA
GFAQEIERRATTQEAPVVDGVTLASLHSAKGLEWDAVFLVGLSEGLMPISFADTPDAMDE
ERRLLYVGITRAREHLVLSWSLSRTPGGRPNRARSRFLDAVLPPAPRTPARRRGGR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtggagcagagcgccgaggagcggatcctcggaggcctggacccggagcagcgc
gtggtcgcgaccacactgaacggtccggtgtgcgtgcgcgctggagcgggcaccggcaag
acgcgggccatcacccaccgcatcgcgtggggcatcgcctcgggggtctataccccccag
aagaccctggccctgaccttcaccgcgcgcgccgccaatgagatgcgccagcggctgcgg
gccctcggggctcccggtgtgcaggcccggaccttccactctgccgccctgcgccagctg
cagtacttctggccgcaggccgtgggtgggcccccgccggggctcgtgaaccacaaggcg
agactgatcaccgaggccgcccaggccatgcgcctgaccacggaccgggcgaccgtccgg
gacgtcgcggccgagatcgagtgggccaaggtctccatgcacaccccggacacctatccg
caggcggcgggccagcgggacatgcccgcgggctacgacgtccgcaccatgcagcggctc
taccagtcctacgaggacctcaaggcggaccgacacctgatcgacttcgaggacgtcctg
ctgatcacggtggggatcctggaggaggacgagcggatcgccgcggcggtgcacgcgcag
taccgccagttcgtggtggacgagtaccaggacgtctcgcccctgcagcagcggctgctg
gacgcgtggctcggctcccgggacgatctctgcgtggtgggggacgcctcccagaccatc
tactccttcacgggcgccacgtcccggcacctgctggagttcccgtcccggtaccccggg
gcgtccgtggtggagctgatccgcgactaccgctccacccctcaggtggtcaacaccgcc
aaccggctgctggccgcgcgccgcccgtccctcacgtccaccccggacacgtgggccaca
ccgctgcgcctggtctcccagcgccccgcgggccccgagcccgcgtggaacgagtatccg
gacgacgaggccgaggccgcgggcgtggccgtgcggatccaggacctgatcgacgacggc
gtggccccgcacgagatcgccgtcctgttccgcaccaacggccagtcgcaggcattcgaa
gccgcactcgcggatgcgaacatcggcttccagctgcgcggctccgaacggttcttcaac
cggcccgagatccggcaggccatcgtgcagatccgttccgccgcacgcacggcgggcgcg
gaccgcgcggacgtcccccagcaggtgcgggacatgctcggttcgctcggctacacggag
cgggccccgcgctccgacagcgccacgcgcgccaagtgggagtccctgcgtgcactcgtc
tcgctcgctgacaccatggcccgccgcgccgtggcggacggcgagacgctgtcgctcgcc
ggtttcgcgcaggagatcgaacgccgtgcgaccacccaggaggccccggtggtggacggg
gtcacgctcgcgtccctgcactcggctaagggcctggagtgggatgccgtgttcctcgtg
gggctctccgagggactcatgcccatcagcttcgccgacaccccggatgccatggacgag
gagcgccggctgctctacgtggggatcacccgcgcgcgggagcacctcgtgctctcgtgg
tcgctgtcccggaccccgggcggtcggcccaaccgggcccggtcccgtttcctcgacgcc
gtgctgccccccgcgccgcgcaccccggcacgacgccgcggcggccgctaa
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