Kocuria sp. KD4: HBK84_04940
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Entry
HBK84_04940 CDS
T06521
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kod
Kocuria sp. KD4
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kod03019
]
HBK84_04940 (hrpA)
Enzymes [BR:
kod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HBK84_04940 (hrpA)
Messenger RNA biogenesis [BR:
kod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HBK84_04940 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_23
ABC_tran
T2SSE
PhoH
FtsK_SpoIIIE
NACHT
Motif
Other DBs
NCBI-ProteinID:
QIR69493
LinkDB
All DBs
Position
complement(1070150..1074277)
Genome browser
AA seq
1375 aa
AA seq
DB search
MTEPRIQPRIVYPNDLPVSARREDIMAAIRDHQVVVIAGETGSGKTTQLPKMCLELGLGD
GGLIGHTQPRRIAARSVAERIAHELGQRVGDTVGYQVRFTSEVGKDSRIKLMTDGILLAE
IGHDPQLSRYNAIIIDEAHERSLNIDFLLGYLKRLLPQRPDLKVVITSATIDPQRFAEHF
VLPDPQHPDADPEPAPIIEVSGRTYPVEIRYRPLAQERSRDGGEDEDNTGDGLVDEDRDP
IDAVCDAVVELSREPRGDILVFFAGEREIRDAQDALHKVIDSHRSLAGTQVLPLFGRLSM
AEQNRVFTPSSHRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSARTKVQRLPIERIS
QASARQRAGRSGRTSDGVCIRLYSEEDFESRPEYTDPEILRTNLAAVILQMISVGVVEQP
HDITQFPFVQKPDARAVKDGVVLLRELGALRSGGADAGDDAASSSARDGHRGRRSRSGRH
RGRQSGPRGPLTRTGEVLAALPVDPRLGRMIVESQRRGCVREVLVLTAALTVQDPRERPL
EKRQAADEFHARFRDKTSDFLSYGLLWQYLQEQQSELSSSQFRKLCRREYLNFLRIREWQ
DLYAQLRQIARQVGIDAGASREIDVASHQEAVHKSLLSGLLSNIGVRDERTREYRGARGT
KFAIFPGSALFKTSPDWLVSAELVETSRLWARTNAAIKPEWAEEIAPQLVKRSYSEPHWS
RSRGAVMAYEKVTLYGLPVVSERPVLFSRIDPELSRELFIRHALVEGDWQTRHTFVKRNR
KALAQVEELENRMRRKDLRVDDQVLFDFYDARVPADVVSQRHFDAWWKKARQRDEHLLDL
TPEDLIAPEVAELDTASFPRSWTVASPDGELSLDLDYEFAPGAETADGVTVRVPVLFLDR
LAPEQFEWHIPGLRVELVTALIKSLPKAVRRNFVPAPDTAVTAVKHLDAEFDPTRDSLLE
SLATVLRRLRGHPVQASDFHPEALPAHLRMRFEVRDARNSVLGRGDDLTELKQRLRPKVR
AALAESLGGAAAQLYDAARGSAEGSASSGDDAAAARRGRGKRGSARPAPGTSPGSGAPQA
ASLERTDLTAWPEPDPPRRVETTVAGQTVTGYPTLVAVRDTDASQPPRVDLRILSDAEEQ
RAAQRDGVIALLHRTLPSVHRYVVDHLSQKERLIFTQNPHGSVEALITDCTIAAIDRLVP
EEPPFTRDQFRAVAEHVRAELIDTVFAVTALVTTALTESNTVRKRLKKPGSLGAVAAFKD
MSEQLSRLIHPGFVARTGWRALQHVPRYLAGINVRLDKLSGHLQRDAVAMQTVHDLEAEY
RAAVDAVPSTVPTPAALRAVRWDLEELRISFFAQELGTAHTVSEKRIRKRLRELG
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgactgagccccgcatccagccccgcatcgtgtacccgaacgacctccccgtcagcgcg
cgccgggaagacattatggccgcgatccgcgatcaccaggtcgtggtgatcgcgggtgag
accggttccggcaagaccacccagctgcccaagatgtgtctggagctgggtctgggggac
ggcggtctgatcggtcacacccagccgcgcaggattgcggcgcgttcggtggccgagcgc
atcgcccatgaactcgggcagcgcgtgggcgacaccgtgggctaccaggtgcgcttcacg
tccgaggtgggcaaggactcgcggatcaagctcatgacggacggcatcctgctggccgag
atcggtcacgacccgcagctgtcgcgctacaacgcgatcatcatcgacgaggcccacgag
cgctccctcaacatcgacttcctgctgggctacctcaagcgactgctcccccagcgcccg
gacctgaaggtcgtcatcacgtccgcgacgatcgacccgcaacgcttcgccgagcacttc
gtgctgccggacccgcagcacccggacgccgatccagagcccgccccgatcatcgaggtc
tccgggcgcacctaccccgtggagatccgctaccgaccactggcccaggagcgcagccgg
gacggcggcgaggacgaggacaacaccggtgacgggctcgtggacgaggaccgcgacccg
atcgacgccgtgtgcgacgccgtcgtggaactctcgcgcgaaccccgcggggacatcctc
gtgttcttcgcgggcgagcgtgagatccgggacgcccaggacgcgctgcacaaggtcatc
gactcgcaccgctccctggccgggacccaggtcctgccgctgttcgggcggctgtccatg
gccgaacagaaccgcgtgttcacaccgtcctcgcaccgccggatcgtgctcgcgaccaac
gtggccgagacctcgctcacggtcccgggcatcaagtacgtgatcgacccgggcaccgcc
cggatctcccggtactcggcgcgcaccaaggtccagcgcctgcccatcgagcgcatctcc
caggcgtcggcgcggcagcgcgcggggcgctcggggcgtacgtccgacggcgtgtgcatt
cggttgtactccgaggaggacttcgagtcccggccggagtacacggacccggagatcctg
cgcacgaacctcgccgcggtcatcctgcagatgatctcggtgggcgtggtggagcaaccc
cacgacatcacccagttcccgttcgtgcagaaacccgatgcgcgcgcggtcaaggacggc
gtggtgctgctgcgcgaactcggtgccctgcgctcgggtggggcggacgcgggcgacgac
gcggcgtcgtcgtccgcgcgtgacgggcaccgggggcggcgctcgcggtccgggcgccac
cgcggtcggcagagcggaccgcggggtccgctgacccgcacgggcgaggtgctcgccgcg
ctgccggtggacccacgactgggccggatgatcgtggagtcgcagcgccgggggtgcgtg
cgcgaggtgctcgtgctcacggccgcgctcacggtgcaggacccgcgggaacgcccgctc
gagaagcgccaggcggcggacgagttccacgcacgcttccgcgacaagacctccgacttc
ctgtcctacggtctgctgtggcagtacctgcaggagcagcagagcgagctgtcctcgtcc
cagttccgcaagctgtgccgacgtgagtacctgaacttcctgcggatccgcgagtggcag
gacctctacgcgcagttgcgacagatcgcacgccaggtggggatcgatgccggggcgtcc
cgggagatcgacgtcgcctcgcaccaggaggccgtgcacaagagcctgctgtccgggcta
ctgagcaacatcggcgtgcgggacgaacgcacgcgcgagtaccgcggtgcgcgcgggacc
aagttcgcgatcttcccgggctcggccctgttcaagacgtccccggactggctcgtgtcc
gcggagctcgtggagacctcccgattgtgggcgcgcaccaacgcggcgatcaagcccgag
tgggccgaggagatcgcgccgcagctcgtcaagcgcagctactccgaaccccactggtcc
cgttcccgcggggccgtgatggcgtacgagaaggtcacgctctacgggctgcccgtggtg
tccgagcggcccgtgttgttctcccggatcgatcccgaactctcccgggaactgttcatc
cgccacgcgctcgtggagggcgactggcagacccgccacacgttcgtcaagcgcaatcgc
aaggccctggcccaggtcgaggagctcgagaaccgcatgcgccgcaaggacctgcgcgtg
gacgaccaggtgctgttcgacttctacgacgcgcgcgtgcccgcggacgtggtctcccag
cggcatttcgatgcgtggtggaagaaggcccgccagcgggacgagcacctgctggacctc
actcccgaggacctgatcgcgcccgaggtcgcggagctggacacggcctccttcccgcgg
tcctggaccgtggcatccccggacggcgagctgagtctggacctggactacgaattcgcg
cccggggcggagaccgcggacggcgtcacggtgcgggtccccgtgctgttcctggaccga
ctggcccccgagcagttcgaatggcacatccccgggctgcgtgtggagctcgtgaccgcg
ctgatcaaatcgctgcccaaggccgtgcggcgcaacttcgtgcccgccccggacaccgcc
gtcaccgccgtgaagcacctggacgccgagttcgatccgacccgcgactccctcctggag
tccctggccaccgttctgcggcggttgcggggccaccccgtccaggcctcggacttccac
ccggaggccctgcccgcccacctgcgcatgcgcttcgaggtgcgcgacgcccgcaactcg
gtactgggccggggcgacgacctcacggagctcaaacagcggttgcggcccaaggtccgc
gcggcgctcgccgagtccctcgggggcgctgcggcccagctgtacgacgccgctcggggc
agcgccgagggttcggcctcgtccggtgacgacgccgccgcggcccgtcgcggtcgcggc
aagcggggctcggcgcgaccggccccagggacttcccccggatccggcgcaccccaggcc
gcctcgctggaacgcaccgacctcacggcgtggcccgaacccgatccgccgcgccgcgtg
gagacgaccgtggcgggtcagacggtcacgggataccccacactcgtggcggtgcgggac
accgatgcttcgcagccaccccgcgtggacctgcggatcctgagcgacgcggaggaacag
cgcgccgcgcaacgcgacggcgtgatcgccctgctgcaccggaccctgccgtccgtgcac
cgctacgtggtggaccacctgagccagaaggaacggttgatcttcacccagaacccccac
ggttcggtcgaggcgctcatcaccgattgcacgatcgccgcgatcgaccggctggtaccc
gaggagccgccgttcacgcgggaccagttccgggcggtcgcggagcacgtacgcgccgag
ctgatcgacacggtcttcgccgtcaccgcgctcgtgaccaccgcgctcaccgagtccaac
accgtgcgcaaacggttgaagaaacccgggtcactcggggcggtcgccgcgttcaaggac
atgtccgagcagctctcccgcttgatccatcccggcttcgtggcccgcaccgggtggcgg
gccctgcagcacgtgccgcgctacctcgcggggatcaacgtgcgcctggacaaactctcc
ggccacctgcagcgggacgccgtggccatgcagaccgtgcacgatctcgaggccgagtac
cgcgccgcggtggacgccgtcccctcgaccgtacccacgcccgctgcgctgcgggccgtg
cgctgggacctcgaggaactgcgcatctcgttcttcgcgcaggaactgggcaccgcgcac
acggtgtcggagaagcggatccgcaagcggttgcgcgagctcggctga
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