Kocuria sp. KD4: HBK84_06260
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Entry
HBK84_06260 CDS
T06521
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
kod
Kocuria sp. KD4
Pathway
kod03030
DNA replication
kod03410
Base excision repair
kod03420
Nucleotide excision repair
kod03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HBK84_06260 (polA)
03410 Base excision repair
HBK84_06260 (polA)
03420 Nucleotide excision repair
HBK84_06260 (polA)
03440 Homologous recombination
HBK84_06260 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kod03032
]
HBK84_06260 (polA)
03400 DNA repair and recombination proteins [BR:
kod03400
]
HBK84_06260 (polA)
Enzymes [BR:
kod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HBK84_06260 (polA)
DNA replication proteins [BR:
kod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HBK84_06260 (polA)
DNA repair and recombination proteins [BR:
kod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HBK84_06260 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBK84_06260 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QIR69698
LinkDB
All DBs
Position
1362372..1365263
Genome browser
AA seq
963 aa
AA seq
DB search
MTETSKQASQDVPETRTVVIGEKTEHPQEVSLPVPVSRPEKRLLLIDGHSLAFRAFFALS
RAAEYGGGPGFVTSDGVHTEGVYGFVNTMVKLVREEKPTHLVVSFDLEGPTLRSQEYGEY
KGGRDETPEEFHGQVPNIRRILEAVGIPIVTSEGHEADDVLATLATTAAAEDFEVLVFSG
DRDAFQMITDHVTVVYPGRTPSDLRRMDAQAVFEKYKVAPQNYPDLAALTGETADNLPGV
PGVGPGFAAKWITSYGPVESLLEHADRITGKKGEALREHEDLVRRNRKLNRLVTDLPLGV
DLDHAVLPEADPERVGVVFDELEFGAQLRGRLLEAFGSHASDDAAAATVPEVTDVTRVRT
AQEFSDWLDAGEKDVPIVVRRLAHDPKAPSGAEVTTLMLMNQGGAAVDLVTADQELTIAV
EAWLADPAAPKIVDGLKDLYHGLIQRGIKLAGVVDDVQLSGYLVRPALRSYELDAQLSHH
LEVEVPRADESAASEKNGQTELALDASDEQDELAGVSDAELRRQATLGSACRQLSEHLRG
LLEADGQLGLLTDLEMPLAVILARMEATGIAMDRPGIDRLFDDLQQPIDQAFEQAQAQID
HEINLGSTKQLQAVMFEELGLPKTKKTKTGYTTDAAAVADLLGRVDPETQGSRFLVALMN
WREYSKLKQIVAGLRDAIAEDGRIHTTYQQTVAATGRLSSTGPNLQNIPVRTEQGQRIRD
VFVVGEDSQGPFECLMTADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRVFDVAP
EDVTPQMRSKVKAMSYGLVYGLSSYGLSQQLNIGVDEARTMMSGYFERFGGVRDFLRGVV
EEARSKGYTETIDGRRRYLPDLTSDNRQARQAAERMALNAPIQGSAADIIKKAMIGVDRA
LREDDLRSRVLLQVHDELIVEVAPGETERVEEILRTEMAGAAELTVPLDVNVGTGRTWHQ
AAH
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
gtgactgagacgagcaagcaggccagccaggacgtccctgagacccgcaccgtggtgatc
ggcgagaagaccgagcacccgcaggaggtctcgctgcccgttccggtgtcccggcccgag
aagcgcttgctactgatcgacggccactccctggcgttccgcgcattcttcgcgctatcc
cgcgctgccgagtacggtgggggccccggtttcgtgacgtccgacggcgtccacaccgag
ggcgtctacggatttgtgaacaccatggtcaagctcgtgcgcgaggagaagcccacccac
ctggtcgtctccttcgacctcgagggccctaccctgcgctcccaggagtacggggagtac
aagggcggccgggacgagaccccggaggagttccacgggcaggtccccaacatccgacgc
atcctcgaggctgttggcattccgatcgtcacgagcgagggccacgaggcggacgatgtc
ctggccacgctcgccaccacggccgccgccgaggacttcgaggtgctcgtgttctcgggt
gaccgggacgcgttccagatgatcacggaccacgtgacggtggtctacccgggccgcacg
ccgtcggacctgcgccgcatggacgcgcaggcggtcttcgagaagtacaaggtggccccg
cagaactacccggacctcgccgcgctgacgggggagaccgcggacaacctaccgggtgtg
ccgggcgtgggtcccggcttcgcggccaagtggatcacgtcctacggtcccgtggaatcg
ctgctcgagcacgcggaccggatcaccggcaagaagggcgaggccctgcgcgagcacgag
gacctcgtgcggcgcaaccgcaaactcaaccgcctggtcacggacctgcccctcggcgtg
gacctggatcacgcggtactgcccgaggccgatcccgagcgggtcggcgtagtcttcgac
gagctcgagttcggtgcccagttgcgcgggcgtctgctcgaggccttcggttcccacgct
tccgacgacgccgccgccgccacggttcccgaggtcaccgacgtcacccgggtgcgcacc
gcccaggagttcagcgattggctggacgcgggggagaaggacgtgcccatcgtcgtccgc
cgcttggcgcacgaccccaaggcgccctccggcgcggaggtgaccaccctcatgctcatg
aaccagggcggtgccgccgtggacctcgtgaccgcggaccaggagctgaccatcgccgtc
gaggcatggctcgcagacccggcggcgcccaagatcgtggacggcctcaaggacctgtac
cacggtctgatccagcgcgggatcaagctcgccggtgtcgtggacgacgtccagctctcc
ggctacctcgtgcggcccgcgctgcgttcctacgagctggacgcccaactgagccaccac
ctggaggtggaggtgccccgcgcggacgagtccgcggcgtcggagaaaaacggacagacc
gaactcgcgctggacgcgtcggacgaacaggacgagctggccggtgtgagcgacgccgaa
ctgcgtcgccaggccacgctcggttccgcgtgccggcagttgagcgaacacctgcgcggg
ctgctcgaggccgacggccaactggggctgctcacggatctggagatgcccctcgccgtg
atcctcgcccggatggaggccacggggatcgcgatggaccgcccaggtatcgaccggttg
ttcgacgacctccagcaaccgatcgaccaggccttcgagcaggcgcaggcgcagatcgac
cacgagatcaacctgggttccaccaagcaactgcaggccgtgatgttcgaggaactcggc
ctgcccaagaccaagaagaccaagaccgggtacaccacggacgccgcggcggtcgcggac
ctgctcggacgcgtggaccccgagacccagggttcgcggttcctcgtggcgctcatgaac
tggcgcgagtactccaagctcaagcagatcgtggccggattgcgggacgcgatcgccgag
gacgggcgcatccacaccacgtaccagcagaccgtggcggccaccggacggctgtcctcc
acgggtcccaacctgcagaacatccccgtgcgcaccgaacagggccagcgcatccgcgac
gtgttcgtggtgggggaggactcccagggcccgttcgaatgcctcatgaccgcggactac
tcccagatcgagatgcggatcatggcccacctgtccggggacgagggcctgatcgaggcg
ttccgcggcggggaggacctgcaccggttcgtgggctcgcgcgtgttcgacgtggccccg
gaggacgtcacccctcagatgcgttccaaggtcaaggccatgagctacggcctcgtctac
gggctgagctcctacggcctgtcccagcagctgaacatcggcgtggacgaggcccgcacc
atgatgagcggctacttcgaacgcttcggcggcgtgcgggacttcctgcgcggcgtcgtc
gaggaagcccgttccaagggctacaccgaaacgatcgacgggcgacgccgctacctcccg
gacctcacgagcgacaaccgccaggcccgccaggccgccgagcgcatggccctgaacgca
cccatccagggctccgccgcggacatcatcaagaaggccatgatcggcgtggaccgggcc
ctgcgcgaggacgacctgcgctcgcgggtgctgctgcaggtccacgacgaactcatcgtg
gaggtcgccccgggggagacggagcgggtcgaggagatcctgcgcaccgagatggccggg
gccgcggaactgaccgtgcccctggacgtcaacgttggcacggggcggacatggcaccag
gccgcccactga
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