Kocuria sp. KD4: HBK84_08475
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Entry
HBK84_08475 CDS
T06521
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
kod
Kocuria sp. KD4
Pathway
kod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBK84_08475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kod03019
]
HBK84_08475
Messenger RNA biogenesis [BR:
kod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HBK84_08475
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
BRK
Motif
Other DBs
NCBI-ProteinID:
QIR70071
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Position
complement(1888444..1890138)
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AA seq
564 aa
AA seq
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MTHWNTTDLSEPSALAKDTLRVIPLGGLGEVGRNMTVFEINGQLLVVDCGVLFPEETQPG
VDLILPDINHIRERLDDIVAIVLTHGHEDHIGAVPYLLKRRPDIPILGSQLTLALIEAKL
QEHRIKPFTMAVREGQVERLGEFECEFVAVNHSIPDALAVFLRTKAGTVLHTGDFKMDQL
PLDGRITDLRHFARLGEEGVDLFLTDSTNAEVPGFIASEKAIGPVLADVVARAKQRVIVA
SFSSHVHRVQQVLDAAVASGRKVVLMGRSMIRNMAIAEKLGYLDVPPNVLVDQKKVGDYR
DDQIVIMCTGSQGEPMAALSRMANGDHKVQVNAGDTVILASSLIPGNENSVFRVINGLMR
LGAEVVHKGNAKVHVSGHAGAGELLYCYNIVEPEYVMPVHGEIRHLIANGNLAQETGVPA
DHVLLAENGTVVDMHSGAAKITGQVECGFIYVDGSSVGEITDADLKDRMTLGEEGFISVI
TVVNRDTGKIVSGPDIHARGVAEEDTVFNEIRPRISAALEDALGESGKNHTTHQLQQIVR
RTVGSWVSRKLRRKPMIVPVVVEA
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgacccattggaacaccaccgacctctccgaaccgtcggcactcgcgaaggacaccctg
cgagtcatccccctgggcggtctgggcgaggtcggtcggaacatgaccgtgttcgagatc
aacgggcagctgctcgtggtcgactgcggtgtcctgttccccgaggaaacccagcccggc
gtggacctgatcctgccggacatcaaccacatccgtgagcgcctcgacgacatcgtcgcg
atcgtgctcacccacgggcacgaggaccacatcggcgcggtcccgtacctgctcaagcgc
cgcccggacatccccatcctgggctcgcagctcacgctcgcgttgatcgaggccaagctg
caggagcaccggatcaagcccttcaccatggccgtgcgcgagggccaggtggagcgcctc
ggtgagttcgagtgcgaattcgtggccgtgaaccactccatcccggacgccctggcagtg
ttcctgcgcaccaaggccgggaccgtgctgcacaccggtgacttcaagatggaccagctg
cccctggacgggcggatcacggacctgcgtcacttcgcccgcctgggcgaggagggtgtg
gacctgttcctcacggactccaccaacgccgaggttcccgggttcatcgcgtccgagaag
gccatcggtcccgtgctcgcagacgtggtcgcccgcgccaagcagcgcgtcatcgtggcg
tcgttctcctcccacgtccaccgcgtgcagcaggtgctcgacgccgccgtggccagtggt
cgcaaggtcgtcctgatgggccgatccatgatccgcaacatggcgatcgccgagaagctc
gggtacctggacgtgccgcccaacgtgctcgtggaccagaagaaggtgggcgactaccgg
gacgaccagatcgtcatcatgtgcaccggttcccagggtgagcccatggccgcgctgtcc
cgcatggccaacggggaccacaaggtccaggtcaacgcgggggacaccgtgatcctggcg
tcctccctgatcccgggcaacgagaactccgtgttccgcgtgatcaacgggctcatgcgc
ctgggcgcggaggtggtgcacaagggcaacgccaaggtccacgtctcgggtcacgccggg
gcgggcgagttgctgtactgctacaacatcgtggaacccgagtacgtcatgccggtccac
ggcgagatccggcacctgatcgccaacggcaacctggcccaggaaaccggcgtccccgcg
gaccacgtgctgctcgcggagaacggcaccgtggtggacatgcattccggcgcggccaag
atcaccgggcaggtggagtgcgggttcatctacgtggacggctcctccgtgggtgagatc
acggacgcggacctcaaggaccgcatgaccctcggtgaggagggcttcatctccgtgatc
accgtggtcaaccgggacaccggcaagatcgtctccggcccggacatccacgcgcgcggc
gtggccgaggaggacaccgtgttcaacgagatccgcccccggatctccgcggccctcgag
gacgcgctcggcgagagcggcaaaaaccacacgacccaccagttgcagcagatcgtgcgg
cgcaccgtgggctcgtgggtctcccgcaagctgcggcgcaagcccatgattgtgcccgtg
gtcgtcgaggcctga
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