Kocuria sp. KD4: HBK84_08540
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Entry
HBK84_08540 CDS
T06521
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
kod
Kocuria sp. KD4
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kod03016
]
HBK84_08540 (truB)
Enzymes [BR:
kod01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HBK84_08540 (truB)
Transfer RNA biogenesis [BR:
kod03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HBK84_08540 (truB)
Prokaryotic type
HBK84_08540 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
ADH_zinc_N
PseudoU_synth_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
QIR70082
LinkDB
All DBs
Position
complement(1901087..1902328)
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AA seq
413 aa
AA seq
DB search
MTKPPRAGRGTDPVTDRQEIPSPAPSLPRVAGLVVVDKPLGWTSHDVVSRMRRLAGTRKV
GHAGTLDPAASGVLVVGVEKATKLLTYVTGTDKTYRASIRLGAATVTDDAEGDVTSTAAP
ERLAALTDDAVLAAVAELTGEIQQVPSAVSAIKVGGQRSYARVRKGEDVELPARPVTVHE
FTVHGISREPTDAEPTAVDVDATVTCSSGTYIRALARDLGEALGVGGHLTALRRTRVGSF
TLEQSHTLDELTEQVRAGGTVSTLPIDDAARGLFPVRDLTAREATDLSHGRRIAATQVHP
GGASQVDGAASRCGAGAGDTASAGDVAASGSEPAGGFRAGLPVACFAPDGTLVALAEDRG
PADRRYTTSVLGIAAGVTFTAAAAPDDTGVEKPGAGDPGAGQDGTKRTERTHD
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagcccccgagagccggtcgcgggactgacccggtgaccgatcgccaggaaatc
ccgagcccggcaccctcgctcccgagggtggccgggctcgtcgtcgtggacaaaccgctc
ggctggacctcgcacgacgtcgtctcgcgcatgcgccgcctcgcggggacccgcaaggtg
ggtcacgcgggcacgctggaccccgcggcgtcgggcgtgctggtcgtgggggtcgagaag
gccaccaagctgctgacctacgtcacgggcacggacaagacgtaccgggcgagcatccgc
ctgggtgccgcgaccgtgaccgacgacgccgagggggacgtcacgagcacggccgcgccc
gagcggctcgccgcgctcaccgatgacgccgtcctggccgcggtcgccgagctgaccggt
gagatccagcaggtcccgtccgcggtcagcgcgatcaaggtgggcgggcagcgctcgtac
gcccgcgtgcgcaagggcgaggacgtggagctgcccgcgcgaccggtcaccgtccacgag
ttcacggtgcacgggatctcccgcgagccgaccgacgctgagcccaccgcggtggatgtc
gatgcgaccgtgacgtgctcctccgggacgtacatccgcgccctcgcgcgcgacctcggg
gaggccctgggcgtgggcgggcacctcacggcgctgcggcgcacgcgcgtggggtcgttc
acgctcgagcagtcgcacacgctcgacgagctcacggagcaggtgcgcgccggcggcacg
gtctcgacgctgccgatcgacgacgccgcgcgcggactgttccccgtgcgcgacctcacc
gcccgggaggccacggacctgtcgcacgggcgcaggatcgccgcgacgcaggttcatcct
ggcggcgcttcgcaggtcgacggcgccgcgtctcgttgcggggcaggagccggtgacacc
gcatccgccggcgacgtcgcggcgtcgggatccgagccggccgggggattccgggcgggg
ctgcccgttgcgtgcttcgcaccggacgggacactcgtggccctcgccgaggaccgcggc
cccgccgaccgccgatacacgacgtcggtgctaggcatagcagcgggggtgacgttcacg
gctgccgcggcgccggatgatacaggcgtggaaaaacccggggcgggcgaccccggagcg
ggacaggacggaaccaagcgaacggaacggacgcacgactga
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