Kocuria sp. KD4: HBK84_09680
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Entry
HBK84_09680 CDS
T06521
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kod
Kocuria sp. KD4
Pathway
kod03420
Nucleotide excision repair
kod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HBK84_09680 (pcrA)
03430 Mismatch repair
HBK84_09680 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kod03400
]
HBK84_09680 (pcrA)
Enzymes [BR:
kod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HBK84_09680 (pcrA)
DNA repair and recombination proteins [BR:
kod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HBK84_09680 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
HBK84_09680 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
AAA_30
Viral_helicase1
ResIII
Peptidase_M19
Motif
Other DBs
NCBI-ProteinID:
QIR70264
LinkDB
All DBs
Position
complement(2156343..2158799)
Genome browser
AA seq
818 aa
AA seq
DB search
MDFLSDNPLLSAASVRSANAPDSDEFSQPTPASGAQLVEGLNDPQRAAVEHAGSPLLIVA
GAGSGKTRVLTHRIAYLLATGRARRGEILAITFTNKAAAEMRERIVDLVGESARSMWIST
FHSLCVRILRREAKTLGLSTNFSIYDSADSLRLITQVAKQHELDPKRFAPKAIQHKISAL
KNELVDDETYLARASSSDPFESAVARVYRGYTQRLRAANAMDFDDLIGETVHMFRAFPQV
LEYYRRRFRHVLVDEYQDTNHAQYALVRELVGGGSENHPDDSGIPPAELTVVGDSDQSIY
AFRGADIRNITDFERDFPSARTILLEQNYRSTQNILSAANSVISQNADRRDKKLWTAEGD
GAPIIGYAAENEHEEARFIAEEIDTLQDEHGIRPGDVAVFYRTNAQSRSLEEILMRVGLP
YKVVGGTRFYERKEIKDAISYLRAIANPADDITVRRIINEPKRGIGDRAQGSIAALADRE
GISFSEAMHRLDEAPALATRSANAIKKFSQLMDDLAELAQGASVTAVLEAVLEQSGYLEA
LRTSTDPQDESRVENLAELVAVVREFEKDHPDAGLGEFLEHVALVADADQIPTQPEPEGG
ASAQQIAEQVAQARSQGVVTLMTLHTAKGLEFPVVFLTGMEHGIFPHQRSFADASSMEEE
RRLAYVGITRARKRLYLTRAESRSMWGQSQFNPASPFLDEIPSRLIEWKREGASAEGGWG
SPVHAGFQARDPLRGSSWGAGAGSGASFRRLSPASAGRVQPQREIPSLSVGDTVEHKAFG
RGSVVAMEGSGDKTVAKVRFGAEEKRLLLRYAPMTKVS
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggacttcctctctgacaatcccctcctgtccgcggcctcggtgcgctcggcgaacgcg
cccgactcggacgagttctcccagcccaccccggcatccggggctcaactcgtggaggga
ctgaacgacccccaacgcgccgccgtggagcacgcgggttccccgctgctcatcgtggcc
ggtgccggttccggcaagaccagggtcctcacgcaccggatcgcctacttgctggccacg
ggccgcgcccgccggggggagatcctcgcgatcacgttcacgaacaaggccgccgcggag
atgcgggagcggatcgtggatctcgtgggggagtccgcgcgctccatgtggatctccacg
ttccactcgctgtgcgtgcggatcctacgccgcgaggccaagaccctggggctgtccacc
aacttctccatctacgactccgcggactccctgcggttgatcacccaggtggccaagcag
catgagttggaccccaagcggttcgcgcccaaggccatccagcacaagatctccgccctc
aagaacgagctcgtggacgacgagacctacctggcccgcgcgagttcctcggacccgttc
gagtccgccgtggcccgggtctaccggggctacacccagcggttgcgtgcggccaacgcc
atggacttcgacgacctcatcggcgagaccgtgcacatgttccgcgcgttccctcaggtg
ctcgagtactaccgacgccgcttccggcacgtgctcgtggacgagtaccaggacaccaac
cacgcccagtacgcgctcgtgcgggaactcgtgggaggcggttccgagaaccacccggat
gactccgggatcccgccggccgaactcacggtggtgggggactcggaccagtccatctac
gcgttccgcggcgcggacatccgcaacatcacggacttcgagcgggactttccctccgcg
cgcaccatcctgctggaacagaactaccgctccacgcagaacatcctctccgcggccaac
tccgtgatctcccagaacgcggaccgccgggacaagaaactgtggaccgcggaaggcgat
ggcgcccccatcatcgggtacgccgctgagaacgaacacgaagaggcccgcttcatcgcg
gaggagatcgacacgctgcaggacgagcacgggatccgccccggcgacgtcgccgtgttc
taccgcaccaacgcacaatcgcgctccctcgaggagatcctgatgcgcgtgggactgccc
tacaaggtggtgggcgggacccgcttctacgagcgcaaggagatcaaggacgccatatcc
tacctgcgcgcgatcgcgaaccccgcggacgacatcaccgtgcggcgcatcatcaacgag
cccaagagagggatcggggaccgcgcccagggctcgatcgcggcgctcgccgaccgcgag
ggcatctccttctccgaggccatgcaccgcttggacgaggcacccgccctggccactcgc
tcggcgaacgccatcaagaagttctcccagctcatggacgatctcgcggaactcgctcag
ggcgcctcggtgaccgcggttctcgaggctgtactcgaacagtccgggtacctcgaggcc
ctgcgtacgtccaccgacccgcaggacgagtcccgtgtggagaacctcgcggagctcgtg
gccgtggtgcgcgagttcgagaaggaccacccggacgcgggcctcggggagttcctggaa
cacgtggccctcgtggcggacgcggaccagatccccacccagcccgaacccgagggcggc
gcgagtgcccagcagatcgcggagcaggtcgcgcaagcgcgttcccagggggtcgtgacg
ctcatgaccctgcacaccgccaagggactcgagttcccggtcgtgttcctcacgggcatg
gagcacgggatcttcccgcaccagcgcagcttcgccgacgcctcgagcatggaggaggaa
cgccgcctcgcgtacgtggggatcacccgggcgcgcaaacggctgtacctcacgcgcgcc
gagtcccgctccatgtgggggcagtcccaattcaatcccgcaagcccgttcctggacgag
atcccttcgcggttgatcgagtggaagcgtgagggcgccagcgccgagggcggatggggt
tcgcccgtgcacgccggattccaggcccgcgatccgttgcgcggttcctcgtggggtgcg
ggcgccggatccggggcaagtttccgcaggctctcaccggcctccgccgggcgcgtgcag
ccccagcgggagattccttccctcagcgtgggggacacggtggagcacaaggcgttcggc
cgcggttccgtggtcgccatggagggctctggggacaagacggtcgccaaggtgcgcttc
ggtgcggaggagaagcggctcctattgcgttacgcgcccatgaccaaggtctcgtaa
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