Kocuria sp. KD4: HBK84_10155
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Entry
HBK84_10155 CDS
T06521
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kod
Kocuria sp. KD4
Pathway
kod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBK84_10155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kod03019
]
HBK84_10155
03400 DNA repair and recombination proteins [BR:
kod03400
]
HBK84_10155
Enzymes [BR:
kod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HBK84_10155
Messenger RNA biogenesis [BR:
kod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBK84_10155
DNA repair and recombination proteins [BR:
kod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HBK84_10155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
PglZ_C
DacZ_P
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
QIR70339
LinkDB
All DBs
Position
complement(2273382..2275538)
Genome browser
AA seq
718 aa
AA seq
DB search
MIAPSHENTASLRDRALDHLRELTGNPHADFHPGQFEAISALVQEHRRALVVQRTGWGKS
AVYFLSALLMRAQGYGPTLIISPLLALMRDQVAAAQRAGVRAAAISSANPTEWAEISAAL
DRGEIDVLLVSPERLNNPRFRDEQLPQLVSRLGLLVVDEAHCISDWGHDFRPDYRRIKDL
LADLSDSVAVLATTATANERVIEDVREQLGVGSGYRGEVFTLRGPLSRASLRLGVLRLPS
TATRLAWLLEHLDQLPGSGIIYALTIGAAEDTARALTEAGHPVAAYTGRTDAAEREELEV
ALKENRVKALVATSALGMGFDKPDLGFVVHLGAPSSPVAYYQQVGRAGRATDTADVLLLP
GGEDREIWEYFATASMPTEEKVTAVVTALAENGGPLSVAALEPRVNIKRTPLELLLKVLA
VDGAVERVSGGWQSTGRPWTYDAPRYERVRKARIAEQQAMMDYQFTSECRMRFLTRQLDD
ATAEPCGRCDVCAGPWYPTTVHSDASAAADAALHRAGVPVEPRAQWPTGMDRLGLQAKGK
IPETERAERGRALARLTDLGWGQRLREIFRSDEHGDPVDSVVTADLGRASITVLAQWDWQ
ERPTAVVAMPSLSRPQLVDSLARGLASAGHLPFWGSLELNPDVPRGSHGGNSAYRLAEVW
DRFLVPEPLAEQLGRAPRASVLLVDDLVDSRWSLTVAARQLRHAGADAVLPFILAAQA
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcgccttcgcacgagaacaccgcatccctccgggaccgagccctggatcacctc
cgtgagctcacggggaacccgcacgccgatttccaccccggccagttcgaggccatctcc
gcactcgtccaggagcaccggcgggcactcgtggtgcagcgcaccgggtgggggaaatcg
gcggtgtacttcctgtccgcgctgttgatgcgggcccagggctacggccccacgctgatc
atctccccgctgctcgcactcatgcgggaccaggtcgcggcggcccagcgcgcgggtgtc
cgcgccgcggccatctcgtccgccaatcccaccgagtgggcggagatctccgcggccctg
gatcgcggcgagatcgacgtcctgttggtgtccccggaacgcctcaacaatccccgtttc
cgggacgagcaactcccacagctcgtctcccggctcggactgctcgtcgtggacgaggcc
cactgcatctcggactggggtcacgacttccgtccggactaccggcgaatcaaggacctg
ctcgcggacctctcggactcggtggccgtactggccaccacggccaccgccaatgaacgc
gtgatcgaggacgtccgggagcagcttggggtgggctccgggtaccgcggcgaggtgttc
accctgcgcggtccgctgtcccgcgcgtccctgcggctcggcgtgctgcgactgccctcc
accgccacacggctcgcctggttgctcgaacacctggaccagcttccgggcagcgggatc
atctacgcgttgaccatcggggcggcggaggacactgcccgagcgctgacggaggcgggc
catcccgtggcggcctacaccggtcgcacggacgcggcggaacgcgaggaactcgaggtc
gccctgaaggagaaccgggtcaaggcccttgtggccacgtccgcgctgggcatgggcttc
gacaaaccggacctgggtttcgtggtgcacctgggagcgccgtcgtccccggtggcgtac
taccagcaggtgggccgcgcggggcgcgcgaccgacaccgcggacgtcctgctgctaccg
ggcggcgaggaccgggagatctgggagtacttcgccaccgcgtccatgcccaccgaggag
aaggtcaccgcggtggtcaccgcgctcgcggagaacggcggcccgttgtcggtcgcggct
ctcgagccgcgggtcaacatcaaacgcaccccgctcgagctgttgctcaaggtgctcgcg
gtggacggcgcggtggaacgggtctccggcggctggcagagcacgggccggccctggacc
tacgacgccccgcgttacgagcgggtgcgcaaggccaggatcgcggaacagcaggccatg
atggattaccagttcacgagcgagtgccgcatgcgcttcctcacccgtcagctcgacgac
gccaccgcggaaccgtgcggtcggtgcgacgtgtgcgccgggccgtggtaccccaccacc
gtgcattccgacgcctccgccgcagcggacgccgccctgcaccgggccggtgtccccgtg
gaaccccgcgcgcagtggcccaccggcatggatcgattggggttgcaggccaaggggaaa
atcccggaaacggaacgcgccgaacgcggccgcgccctggcccggctcaccgatctcgga
tgggggcagcggttgcgggaaatcttccgctcggacgagcacggcgatcccgtggattcg
gtggtcacggcggacctgggacgcgcgagcatcaccgtcctggcgcagtgggactggcag
gaacggcccaccgcggtcgtggccatgccgtcactgtcccgcccacagctcgtggactcg
ctggcccgcgggctcgcctccgcggggcacctgccgttttggggctcgctcgaactgaac
ccggacgtcccccgcggctcccacggcggcaacagcgcctatcggctcgccgaggtgtgg
gaccggttcctggtcccggagcccctcgcggaacagttggggcgggcgccgcgggcgagc
gtgctgctcgtggacgacctcgtggacagccggtggagcctcacggtcgcggcccggcag
ttgcgccacgccggggcggacgcggtgctgccgttcatactcgccgcccaggcgtga
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