Komagataeibacter oboediens: LV478_03435
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Entry
LV478_03435 CDS
T08952
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
koi
Komagataeibacter oboediens
Brite
KEGG Orthology (KO) [BR:
koi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koi03019
]
LV478_03435 (hrpB)
Enzymes [BR:
koi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LV478_03435 (hrpB)
Messenger RNA biogenesis [BR:
koi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LV478_03435 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
Flavi_DEAD
ResIII
AAA_22
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WEQ52617
LinkDB
All DBs
Position
226178..228736
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AA seq
852 aa
AA seq
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MALDPTLQNRLDALLSEGGNALPVAAALPPLQNALTRTSNAVLVAPPGAGKTTLVPLALL
DAPWRGDGRIVMLEPRRLATRAAATRMSELMGEQPGGLVGYRTRLDGATSERTRIEVITE
GLLVRRLLSDPTLDGVACVIFDEIHERSVDADAALAFCLDLQRSLRPELKLVAMSATMDG
AALAQRMNAELVESEGRMFPVEIRHATRDLVHRRDLPDAMAAAIRAAIAQDPGDVLAFLP
GVAEIHRTRTLLDGIAADVLPLYGELPPAEQDRALSPHPDGRRRVILATSIAETSLTVPG
VRIVVDGGFRRVPRLDVGTGLTRLDTVRISRAAANQRAGRAGRVAPGHAIRLWTEMTTRA
MPPHDQPEMMEAELTGLRLDAAAWQDAMGTAPADLPFPDPPPNGAFEAGRSLLQALGALD
DESRITREGTRMATLGAHPRLAAMMLAARTPAERAMAADIAALLEERDPLRPRRPAGGGR
GAPPTAPADIRLRLDLLAGGDHPDADRAALSRIRHAARQYRRRLGLGRDIPASGDPAALI
AAAFPDRVAQSRGDAGSFRMAGGGSARLSKTDELARCALLAVAGMHVRKAAEICLAAPLD
RDALPDSLLARAREQVETTLDTTTGNVLARRRLRLGNLVLRDRTVSASADEVCALLCAQA
AQNPAATFTWSDACRQLQARVELARTRLDRPDLPDLSDEALARTTESWLAPWLAGVNRLS
ALAEMDLLAMLRATMDHATLKWLDRMLPTHLDMPGGRAAIDYLQPVPVASARAQTFYGVT
QTPRIADGQVDLRIALLSPAGRPQAITADLAGFWAGSWADMRRDMRGRYPRHDWPENPAT
ATPPPPRPRRTP
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggccttagacccgaccttgcaaaaccgtcttgacgccctcctgtccgaaggcggcaac
gcgctgcctgtcgccgctgccctgccgccgctgcagaatgcactgacacgcacgtccaac
gccgtgctggtcgccccgcccggtgcgggcaagaccacgctggtgccgctggcgctgctg
gatgcgccatggcgtggcgacgggcggatcgtgatgctggaaccacgcaggctggccacc
cgcgcggccgccacgcgcatgtcggaacttatgggcgaacagccgggcgggctggtcggg
taccgcacccggctggatggcgcgacatcggagcgcacgcgcatcgaggtgattaccgaa
ggcctgctggtgcgccgcctgctgtccgatcccacgctggatggggtggcatgcgtcatc
tttgatgaaatccacgaacgatccgtcgatgcggatgccgcccttgccttctgccttgac
ctgcaacgcagcctgcggcccgaactgaagctggtcgccatgtccgccaccatggacggg
gcggcactggcgcagcgcatgaatgccgaactggtggaaagcgaaggccggatgttcccc
gtggagatccgccacgccacccgtgaccttgtccatcgccgcgacctgcccgacgccatg
gccgccgccatccgcgccgccatcgcacaggacccgggcgatgtgctggccttcctgccc
ggcgttgccgaaatccaccgcacgcgcaccctgctggacgggatcgcggcggatgtcctg
cctttatatggcgaactgccccctgccgagcaggaccgcgccctgtccccccatcccgat
gggcgcaggcgggtgatcctggccacctccattgccgaaacatccctgaccgtgccaggg
gtgcgcattgtggtggacggggggttccgccgcgtgccgcggctggatgtgggcacgggt
cttacgcgactcgatacggtgcggatttcgcgtgccgccgccaatcagcgcgcaggccgc
gcgggacgtgtcgcccccggacacgccatacgcctgtggacggaaatgaccacccgcgcc
atgccgccccacgaccagcccgaaatgatggaggccgaactgaccggcctgcggctggat
gcggcggcatggcaggatgcaatgggcacggcgcccgccgatctgccttttcccgatcct
ccgccaaatggcgcgttcgaggccgggcgcagcctgctgcaggcactcggcgcactggat
gacgaatcccgcatcacgcgggagggcacgcgcatggccacccttggcgcacatccgcgt
ctggccgccatgatgctggccgcgcgcacaccagccgaacgcgccatggccgccgacatc
gccgccctgctggaagaacgcgacccgctgcgcccccgtcgccccgccggtggcggtcgg
ggcgcgccgcccacggcccctgccgatattcgcctgcgtctggacctgctggccggtggc
gaccatcccgatgccgaccgcgcggcgctgtcacgcatccgccatgccgcccggcagtac
cgcaggcggctgggcctgggccgtgacattcccgccagtggcgatcccgccgccctgatt
gccgcagccttccccgaccgggtggcgcagtcacgcggggatgcgggatcgttccgcatg
gccggcggcggcagcgcgcgcctgtccaagacggatgaactggcacgctgcgccctgctg
gccgtggcgggcatgcatgtgcgcaaggcggccgagatatgccttgccgccccgctggac
cgtgatgcgctgccggacagcctgctggcgcgggcgcgcgaacaggttgaaaccacactg
gacacgacaacgggcaacgtgctggcgcgacgcaggctgcggctgggcaaccttgtgctg
cgtgaccgcaccgtgagcgccagtgccgatgaagtctgtgccctcctgtgcgcgcaggcg
gcacagaaccctgccgcgaccttcacatggagcgacgcctgccgccagttgcaggcccgc
gtggaactggcgcgtacccgcctggaccgcccggatctgcccgacctgtcggatgaggcc
ctggcccgaaccaccgaaagctggcttgccccgtggcttgcgggggtgaaccgcctgtcc
gcgctggcggaaatggacctgctggccatgctgcgcgcgacgatggaccacgccacgctg
aaatggctggaccgcatgttgcccacccatctggacatgccggggggacgggccgcgatc
gactacctgcaacccgtgccggtggcatcagcacgggcgcagaccttctatggggtgaca
cagaccccccgcattgccgacgggcaggtcgacctgcgtatcgccctgctgtcgcccgcg
ggcaggccgcaggccattaccgccgaccttgcagggttctgggccgggtcatgggcggat
atgcgccgtgacatgcgcggacgctatccccgccatgactggcccgaaaaccccgccaca
gccacgcccccaccgccccggccgcgtcgtacgccataa
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