Komagataeibacter oboediens: LV478_05815
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Entry
LV478_05815 CDS
T08952
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
koi
Komagataeibacter oboediens
Pathway
koi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV478_05815 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
koi03021
]
LV478_05815 (rho)
03019 Messenger RNA biogenesis [BR:
koi03019
]
LV478_05815 (rho)
Transcription machinery [BR:
koi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LV478_05815 (rho)
Messenger RNA biogenesis [BR:
koi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LV478_05815 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
NACHT
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
WEQ53044
LinkDB
All DBs
Position
729246..730556
Genome browser
AA seq
436 aa
AA seq
DB search
MQLAELKAKSPADLLAYAESLNIENASSLRKQELMFTILKTLADNDQAIYGDGTLEILSD
GFGFLRSPEANYLPGPDDIYISPSQVRRFGLRTGDTVEGQIRAPRDGERYFALLKVNAIN
FEPPEAVRQRINFDNLTPLYPERRLKMEVENSAVGGATEPPANGKGKGKTPNRDFTSRVI
DLVSPIGMGQRALIVAPPRTGKTVMLQSIASSISANHPEVFLIVLLIDERPEEVTDMARS
VRGEVVSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSG
KVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSE
LILDRKLADKRTFPAIDITKSGTRKEELLVDRADLAKMWVLRRILAPMGTMDAMDFLLDK
LKYSKTNHDFFDAMNT
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcgccgaactcaaggccaaatccccagcagaccttctggcatatgctgaaagt
ctgaacattgaaaacgcatcttctcttcgcaagcaggagttgatgttcacgatcctcaag
acactggccgacaatgatcaggccatctatggggacggcacgcttgaaatcctgtctgat
ggctttggcttcctccgctcaccggaagccaattacctgcccggacctgatgatatctac
atttcccccagccaggtccgccgcttcggcctgcgcaccggtgacacggttgagggtcag
atccgcgcgccccgtgatggggaacggtattttgccctgctgaaggtcaacgcgatcaat
tttgaaccgcccgaggccgtgcgccagcggatcaatttcgataacctgacgccgctttac
cccgaacgccgcctgaagatggaagtcgagaactcggctgtgggaggcgctacggaaccg
ccagccaatggcaaggggaagggcaagaccccgaaccgcgatttcacatcgcgcgtaatc
gaccttgtctcgcccatcggcatgggccagcgcgcgctgatcgtggccccgccgcgcacc
ggcaagaccgtgatgctgcagagcatcgcctcctccatttccgctaaccatcccgaagtg
ttcctgatcgtgctgctgattgacgagcggccggaagaagtgacggacatggcgcgttcg
gtgcggggggaggtggtgtcctccacctttgacgaacctgcaacacgtcatgtccaggtt
acggaaatggtgctggaaaaggccaagcgcctggtcgagcacaagcgtgatgtcgtgatc
ctgctggattcgatcacacgtctggcccgtgcctacaacaccgtcgtgccgtcatcgggc
aaggtgctgaccggtggtgtggatgcaaacgcactgcagcgccccaagcgcttcttcggt
gcggcccgtaatatcgaggaaggcggttcgctgaccattatcgcgaccgcgctgatcgat
accggcagccgtatggatgaagtcatctttgaagagttcaagggcaccggtaactccgaa
ctgatccttgaccgcaagctggctgacaagcgtacgttcccggccatcgacatcaccaag
agtggcacccgtaaggaagagctgctggttgatcgggccgatctggccaagatgtgggtc
ctgcgccgtatccttgcccccatggggaccatggatgcgatggacttcctgctggacaag
ctgaaatacagcaagaccaaccacgatttcttcgatgcgatgaatacctga
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