Komagataeibacter oboediens: LV478_06180
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Entry
LV478_06180 CDS
T08952
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
koi
Komagataeibacter oboediens
Pathway
koi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LV478_06180 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koi03019
]
LV478_06180 (pnp)
03016 Transfer RNA biogenesis [BR:
koi03016
]
LV478_06180 (pnp)
Enzymes [BR:
koi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LV478_06180 (pnp)
Messenger RNA biogenesis [BR:
koi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LV478_06180 (pnp)
Transfer RNA biogenesis [BR:
koi03016
]
Prokaryotic type
tRNA degradation factors
LV478_06180 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
Motif
Other DBs
NCBI-ProteinID:
WEQ53107
LinkDB
All DBs
Position
808949..811084
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AA seq
711 aa
AA seq
DB search
MFNYFRKEIEWGGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKSVKPGQDFFPLT
VNYQEKAYAAGKIPGGFFKREGRPSEAEVLNSRLIDRPIRPLFPENFRNEVQVVATVLSH
DMENDPAVVALIGCSAALTLSGIPFFGPVGAARVGYSNGKYVLNPTISQLKESELDLVVA
GTSEGVLMVESEAVELSEEVMLGAVTFGHEAFQPVIDAIIDLAESAAKAPWDLAEPTAEE
IKLRKKVDKVGRALIADAYKERTKQVRYKKVAAARDAILAKIGEDDADAAKPMIKDLEAD
VVRTEVLDTGFRIDGRDLETIRPIVSEVGILPRAHGSALFTRGETQALVVATLGTGQDEQ
IVDALEGEYRNNFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAIHPLLPGKDTFPY
TMRVVSEITESNGSSSMATVCGTSLALMDAGVPLKRPVAGIAMGLIKEDEDFAVLSDILG
DEDHLGDMDFKVAGTEQGVTALQMDIKITSITPEIMKIALGQARQGRLHILGEMAKALTE
GRSDVSSSAPKITTISVPKEKIRDVIGQGGKVIREIVEYSGAKIDINDDGTIMIAASSDD
QAEKAIERIRGITAEPEVGHIYNGKVVKTADFGAFVNFLGPRDGLVHISELAQGRVSKTT
DVVKQGDEVKVKVLGFDDRGKVKLSMRVVDQETGADITETVGAKPGRAPAR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgttcaattattttcgcaaggaaatcgaatggggcggccgcccgctggtgctggaaacg
ggcaagatcgcccgtcaggccgacggcgcggttgtcgtaacctatggcgacacggtggtg
ctgtgcacggccgttggcgccaagagcgtgaagccgggacaggatttcttcccgctgacg
gttaactatcaggaaaaggcctatgccgcgggcaagatccccggtggcttcttcaagcgt
gaaggccgcccgagcgaggctgaagtcctgaactcgcgcctgattgaccgcccgatccgc
ccgctgttccccgaaaacttccgtaatgaagtgcaggtcgtcgccaccgtgctgagccac
gacatggaaaacgaccccgccgttgtggcgctgatcggctgttcggcggcgctgacgctg
tcgggcattccgttctttggtccggtgggtgcagcccgtgtcggttattccaacggtaag
tacgtgctgaacccgaccatttcccagctcaaggaaagcgaactggacctggttgtggcc
ggcacgtccgaaggcgtgctgatggtcgagtccgaggccgtagaactgtccgaagaggtg
atgctgggtgcggtgacgttcggtcacgaagccttccagccggtgatcgatgcgatcatt
gacctggccgaaagcgcagccaaggccccttgggacctggccgagccgacggctgaggaa
atcaagctgcgcaagaaggtggacaaggtcggtcgcgccctgatcgccgatgcgtacaag
gaacgcacaaagcaggtgcgttacaagaaggtcgcagccgcgcgtgacgccatccttgcc
aagattggcgaggacgatgctgatgccgccaagcccatgatcaaggatctggaagccgat
gtggtccgcaccgaggtgctggacaccggtttccgtatcgatggccgtgatctggaaacg
atccgcccgatcgtgtccgaagtcggtatcctgccccgtgcgcatgggtccgccctgttc
acccgtggcgagacgcaggcccttgtggtcgcgacgcttggcaccggtcaggacgagcag
atcgtggatgcgctggaaggcgaataccgcaacaacttcatgctgcactacaacttcccg
ccgttctcggtcggggaatgcgggcgcatggggtcccctggccgtcgtgaaatcggccat
ggcaagctggcatggcgtgcgatccacccgctgctgccgggcaaggacaccttcccgtac
accatgcgtgtcgtgtccgagatcacggaaagcaatggttcgtcttccatggcgaccgta
tgtggcacctcgcttgcgctgatggatgccggtgtgccgctgaagcgtccggtggcgggc
atcgccatgggcctgatcaaggaagacgaggacttcgccgtcctgtccgacatccttggc
gatgaagatcaccttggcgacatggacttcaaggtagcgggcaccgagcagggcgtgacc
gcgctgcagatggacatcaagatcacgtccatcacgcctgaaatcatgaagatcgcgctg
ggtcaggcccgtcagggtcgcctgcacattctgggtgaaatggccaaggcgctgaccgaa
ggccgttcggatgtgtcgtcttccgcgccgaagatcaccacgatctccgtgccgaaggaa
aagatccgtgatgtgatcggtcagggcggtaaagtcattcgtgagatcgttgaatattcg
ggtgcgaagatcgacatcaacgatgacggcacgatcatgatcgcggcgtcgtccgacgat
caggccgaaaaggccatcgagcggatccgtggcatcacggcggaacccgaagtgggccac
atctataacggcaaggttgtcaagaccgccgatttcggtgcgttcgtcaacttcctcggc
ccccgtgacgggctggttcacatttccgaactggcgcagggccgtgtctccaagacgacc
gatgtcgtcaagcagggagacgaagtgaaggtgaaggtgctgggctttgacgatcgcggc
aaggtcaagctgtccatgcgcgtggtcgatcaggaaaccggtgccgatatcaccgagaca
gtgggcgccaagcccggccgggcgcccgcgcgctaa
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