Komagataeibacter oboediens: LV478_16905
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Entry
LV478_16905 CDS
T08952
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
koi
Komagataeibacter oboediens
Pathway
koi03030
DNA replication
koi03430
Mismatch repair
koi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
koi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LV478_16905 (dnaE)
03430 Mismatch repair
LV478_16905 (dnaE)
03440 Homologous recombination
LV478_16905 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
koi03032
]
LV478_16905 (dnaE)
03400 DNA repair and recombination proteins [BR:
koi03400
]
LV478_16905 (dnaE)
Enzymes [BR:
koi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LV478_16905 (dnaE)
DNA replication proteins [BR:
koi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LV478_16905 (dnaE)
DNA repair and recombination proteins [BR:
koi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LV478_16905 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PucR
T2SSK
Motif
Other DBs
NCBI-ProteinID:
WEQ52138
LinkDB
All DBs
Position
complement(3144934..3148368)
Genome browser
AA seq
1144 aa
AA seq
DB search
MSHADFVHLRVHSAYSLSQGAIRVPELVALAHDMRMPAVAITDTGNMFGALEFSQYCGKK
GVQPIIGCQIGLPSRSDKPGSPAEPVVLLARNAEGLANLQFLSSSGFLQHETDEPTVPVE
LLCERAGGLFLLTGGSRGPLFHMLAEGQEGEAARLMDRLHEAYGSHMAVELHRHGQAAER
AVEPGMIAMADRMGLPLVATNECFFPKPDMYEAHDALLCIAQGRTMAERDRWRVTPEHWF
KPPEVMRELFADLPEACDNTLDIARCCAIAVETRKPLLPVCPKVEEGQTEEQTLRHMAVT
GLKNRLSRMAVDDETRTKYEERLAFELDIIAQMGFPGYFMIVADFIQWAKAHDIPVGPGR
GSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFCQDRRDEVIRYVRNEY
GPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNRVAELIPNNPAQPVTLKQAIEGEPR
LQEMRDEDEAIRRLLEIGQQLEGLFRHASTHAAGVVIGDRELVELVPLYRDPKSDMLVTQ
YNMKFVEQAGLVKFDFLGLTTLTILQRAVQFLHGMGIEVDLSALPLDDELTYDMLARGDT
GGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYCRRKHGEPWEPPHEEI
RDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMDRQRVIFTEGAMK
RGIEREKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKANHPVAFIAACMSLAREK
TDKLAGLRQEADRLGIPLLPPDINASGADFTVEKMPDGQTYGIRYALAAVKKVGLSAMQS
LVAVRGDRPFRDLEDLAARLDPRQVNKMQLENLARAGAFDTILPNRAQACGAAETVMRRA
QANAQEAASGQIGLFGGGGSAPAQREPLRLPRCADWPEFERLNMEADAIGFHLTGHPLDS
YGPLMRRLGAVRATGLEAAAQAGIGRVKIAGCVVDRKERPTRTGNKMAWVRLSDASGGCE
ITFFSEVLSRSREILVAGNAVVVSADLKMDGEALRITASDVMELEQAAAEAAAELRIWFD
RADALEPIRDVLQGNGNGRGRVILLPSVAETRDVELTLAERYRVTPRVAQMIKAIEGVGK
VEQF
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatgccgatttcgttcacctgcgcgtccattccgcctattccctcagccagggg
gccatccgcgtgcccgaactggtggcgctggcgcatgacatgcgcatgcccgccgtcgcc
attacggatacgggcaacatgttcggcgcgctggagttttcgcaatattgcggcaagaag
ggcgtgcagcccatcatcggctgccagatcggcctgccgtcgcgcagtgacaagcccggc
agcccggcggagcccgtcgtcctgctggcgcgtaatgcggaagggctggccaacctgcag
ttcctgtcctcctcggggttcctgcagcacgaaacggatgaaccgaccgtgccggtggaa
ctgctgtgcgaacgcgcgggcgggctgttcctgctgacgggcggcagccgggggccatta
ttccacatgctggccgaggggcaggagggggaggcagcgcgcctcatggaccgcctgcat
gaagcctatggcagccatatggctgtggaactgcaccgccatggacaggcggcggaacgc
gcggtggagccaggcatgatcgccatggccgaccgcatgggactgccgctggtggccacc
aatgaatgttttttcccgaaaccggatatgtacgaggcgcatgatgcgctgctgtgtatt
gcgcagggccgcaccatggccgaacgcgaccgctggcgggtgacgcccgaacactggttc
aagccgccggaggtcatgcgcgaactgttcgccgacctgcccgaagcatgcgacaatacg
ctggatatcgcacgctgctgcgccattgcggtggaaacgcgcaagcccctgctgccggtc
tgccccaaggtggaagagggacagaccgaagagcagacattgcggcatatggcggtaacc
ggcctgaaaaaccgcctgtcgcgcatggctgtcgatgacgaaacgcgcacgaaatacgaa
gagcgcctggcattcgaactcgacatcatcgcccagatgggcttccccggttatttcatg
atcgtggccgacttcatccagtgggccaaggcgcacgacattcccgtgggaccggggcgt
gggtcgggtgccgggtcgctggcggcatgggcactgaccattaccgatatcgaccccatt
cccttcaacctgctgttcgaacgcttcctcaaccccgaacgtgtgtcgatgcctgacttc
gacattgacttctgccaggaccggcgtgacgaggtcatccgctacgtccgcaatgaatat
ggtcccgaccgcgtggcccagatcatcacgttcggtaagctgcaggcgcgcgcggcggtg
cgtgacgtggggcgcgtgctgggcctgccgtttggcatggtcaaccgcgtggcggagctg
attcccaacaatcccgcccagccggtgacgctgaagcaggcgatcgagggcgagccgcgc
ctgcaggaaatgcgcgacgaggacgaggccatccgccgcctgctggaaatcggccagcag
ctggaaggcctgttccgccacgccagtacccacgcggccggcgtggtgattggcgaccgc
gaactggtggaactggtgccgctgtatcgcgaccccaagagtgacatgctggtcacgcag
tacaacatgaagttcgtggagcaggcggggctggtcaaattcgacttcctcggcctgacc
acgctgaccattctgcaacgcgcggtgcagttcctgcatggcatggggatcgaggttgac
ctgtcggccctgccgctggatgacgaactgacctacgacatgctggcgcgtggtgatacg
gggggcgtgttccagtttgaaggcgcgggcatgcgcgacgtgctcaagcagatgcgcccg
acccggctggaggacctgatcgccgccgtggcgctgtaccgtcccggcccaatggccaac
attcccgattactgccggcgcaagcatggcgagccgtgggagccaccgcacgaggagatc
cgcgatatcctcgaagagacctacggcatcatggtctatcaggaacaggtcatgcagatc
gcccagaaaatggcgggctacagcctgggcggggccgacctgctgcggcgcgccatgggc
aagaagatccgcgcggaaatggaccgccagcgcgtgatctttaccgaaggggcgatgaag
cgcggcatcgagcgcgaaaaggccgccgaggtattcgacctcatggccaagttcgccgat
tacgggttcaacaaatcccatgccgccgcctacgctctggtgtcgtaccagacagcgtgg
atgaaggcgaaccacccggttgccttcattgctgcctgcatgtcccttgcgcgtgaaaag
accgacaagctggcggggctgcggcaggaagcggacaggctgggcattccgctgctgccg
cccgacatcaatgcttccggcgcggatttcacggtggaaaaaatgcccgatggccagacc
tatggcatccgctacgcgctggcggcggtcaagaaggtggggctgagcgccatgcagtcg
ctggtggcggtgcgtggcgacaggccattcagggatctggaggatctggccgcgcgtctt
gacccccggcaggtcaacaagatgcagctggaaaacctggcccgtgcgggggcgttcgat
accatcctgcccaaccgtgcgcaggcctgcggggcggcggaaaccgtcatgcggcgcgcg
caggccaatgcacaggaagcggccagcggccagattggcctgtttggcggtggcggcagc
gcaccggcccagcgtgaaccgctgcgcctgccgcgctgtgccgactggcctgaattcgaa
cggctgaatatggaagcggacgccatcggcttccatctgacagggcatccgctggattcc
tatggtccgctcatgcgtaggttgggcgcggtcagggccacggggctggaggcggcggca
caggcgggcatcggccgcgtcaagatcgcgggctgcgtggtggaccgaaaggaacgcccc
acacgcacgggtaacaagatggcgtgggtgcgcctgtccgatgcatctggcgggtgcgag
atcacgttcttttccgaagtgctgtcgcgatcgcgcgaaatcctggtggcgggcaatgcg
gtggttgtctcggcagatctgaagatggatggcgaagcactgcgcatcaccgcgtccgac
gtgatggaactggaacaggcggcggcggaagcggcggccgaactgcgcatatggttcgac
cgggcggatgcgctggaaccgatccgtgacgtgctgcagggcaatggcaacgggcggggg
cgggtgatcctgctaccgtcggttgcggaaacgcgcgacgtggaactgacgctggccgaa
cgctaccgtgtgacgccacgcgtggcgcagatgatcaaggccatcgaaggcgtgggtaaa
gtggaacagttctag
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