Klebsiella oxytoca KONIH1: KONIH1_01180
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Entry
KONIH1_01180 CDS
T03269
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kok
Klebsiella oxytoca KONIH1
Pathway
kok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KONIH1_01180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kok03019
]
KONIH1_01180
03400 DNA repair and recombination proteins [BR:
kok03400
]
KONIH1_01180
Enzymes [BR:
kok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KONIH1_01180
Messenger RNA biogenesis [BR:
kok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KONIH1_01180
DNA repair and recombination proteins [BR:
kok03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KONIH1_01180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AID87722
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All DBs
Position
236525..238351
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AA seq
608 aa
AA seq
DB search
MAQAEVLNQESLAKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVP
ALVLGGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQIRLLY
IAPERLMLDNFLEHLTHWNLSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMAL
TATADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRYMLMEKFKPLDQLMRYVQDQRGKSGI
IYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGLMDARKAL
STIYRVNQRFGMGYVVEVLRGANNQRIRDMGHDKLPVYGIGREQSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGDVTLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQTPLTAGEMLSVNGVGTRKLERFGKEFMALIR
AHVDGDDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtattgaatcaggaatcgctggctaagcaggttttacaagagacc
ttcggctaccagcagtttcgcccgggccaggaaactatcattgatacggcgttggccggg
cgcgattgcctggtggtgatgccaaccggcggcggtaagtcgctgtgttatcaggttccg
gcgctggtgctgggcggtctcaccgtcgtggtgtcgccgcttatttccttgatgaaggac
caggtcgatcagctgctggctaacggcgtggcggcggcgtgcctgaactcaacccagagc
cgggagcagcagcaggaagtgatggccggctgccgcagcgggcagattcgcctactgtat
atcgccccggagcgcctgatgctggataacttccttgagcatcttacgcactggaatctg
tcgatggtggcggtggacgaggcgcactgtatttcccagtgggggcacgatttccgtccg
gaatacgccgcgttagggcagctgcgccagcggataccgcaaatcccgtttatggcgctg
accgccaccgccgatgacacgacgcgtcgcgacattgttcgcctgctggatctaaacgac
ccgctcattcaggtcagcagcttcgaccgacccaacatccgctatatgctgatggagaag
tttaagccgctggatcagctgatgcgctacgtgcaggaccagcgcggtaagtcgggtatt
atctactgcaatagccgctcaaaagtggaagacaccgccgctcgcctgcaaagccgcggc
atcagcgccgcggcctatcacgccgggctggaaaaccatatccgcgccgacgtgcaggag
aaattccagcgcgacgacctgcaaatcgtggtggcgacggtagccttcggtatgggtatc
aacaaaccgaacgtccgttttgtggtgcatttcgatatcccccgcaatattgaatcctat
taccaggagaccggccgcgccgggcgcgatgggctgcctgccgaggcgatgctgttttac
gatccggcggatatggcgtggctccgacgctgccttgaggagaaacccgccgggccgctg
caggacattgaacgccataagctcaacgcgatgggggcctttgccgaagcgcaaacctgc
cgccgtctggtgctgctcaactactttggcgaggggcgccaggagccctgcggcaactgc
gatatctgcctcgatccgccgaaacagtacgacggtttaatggacgcgcgtaaggcgctg
tcgacgatttaccgcgtcaatcagcgctttggtatgggctacgtggtggaagtgctgcgc
ggcgccaataaccagcgtattcgcgatatggggcacgacaagctgccggtctacggcatt
gggcgcgaacagagccacgagcattgggtcagcgtgatccgtcagcttattcatttaggc
ctggttacgcagaatatagcccagcactctgcgctacagcttaccgaggccgcgcgtccg
gtcctgcgcggcgacgtgacgctacagcttgccgtgccgcgtattgtggcgctgaagccg
aaagcgatgcagaaatcctttggcggtaattacgatcgcaagctgttcgccaagctgcgc
aaactgcgtaaggcgattgccgacgaagagaatatcccgccctacgtggtgtttaacgat
gcgacgctaattgaaatggccgagcaaacgccgctgacggccggggagatgctcagcgtc
aacggcgttggcacgcgtaagctcgagcgttttggtaaagagtttatggccctgatccgc
gcgcacgtggatggcgatgatgagtag
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