Klebsiella oxytoca KONIH1: KONIH1_02520
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Entry
KONIH1_02520 CDS
T03269
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kok
Klebsiella oxytoca KONIH1
Pathway
kok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KONIH1_02520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kok03019
]
KONIH1_02520
03016 Transfer RNA biogenesis [BR:
kok03016
]
KONIH1_02520
Enzymes [BR:
kok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KONIH1_02520
Messenger RNA biogenesis [BR:
kok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KONIH1_02520
Transfer RNA biogenesis [BR:
kok03016
]
Prokaryotic type
tRNA degradation factors
KONIH1_02520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AID87967
LinkDB
All DBs
Position
516016..518466
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPFLDRESEKYANPIPSREFILDHLAKREKPASRDELAIELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVAGLKEQVPEEAKQGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKGGAGKSSGRRRQAGKQVNFEPDSAFRKQKGQSQPKA
AQPKGEKKAKKPSEKTQKIAAATKAKRAAKKKNIAE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaccgcgaatctgaaaaatacgctaatccaatcccgagc
cgggaatttatcctcgatcatttagcaaaacgcgaaaaaccggctagccgagatgagctg
gcaatagagctgaatattgaaggcgaagaacaacaagaagcattgcgccgcagactgcgc
gcaatggaacgcgatggtcagctggtctttacgcgtcgtcagtgctatgcgctgccggaa
cgtcttgacctgctgaaagggaccgttatcggtcatcgcgatggttatggcttcctgcgc
gttgaaggccgtaaagatgacctgtatctgtcgtccgagcagatgaaaacctgtattcac
ggcgatcaggtgctggcgcagccgctgggcgccgaccgtaaaggccgtcgcgaagcgcgt
attgtccgcgtactggtgccaaaaacgggccagattgtgggccgctactttaccgatgcg
ggcgttggcttcgtggtgccggatgacagccgcctgagcttcgatatcctgatccccccg
gaacagatcatgggcgcgcggatggggtttgtggtggtggttgagctgacccagcgccca
acccgccgcaccaaagcggtcggcaagatcgttgaggtcctcggcgacaatatgggtacc
ggcatggcggtcgatatggccctgcgcacccatgaaattccctacgtctggccgccagcg
gtcgaaaaacaggtcgccggcctgaaagaacaggtaccggaagaggcgaaacaagggcgc
gttgatttacgcagcctgccgctggtcaccattgatggcgaagacgcccgtgactttgat
gatgccgtgtactgcgagaagaaacgcggcggtggctggcgtctgtgggtggcgatcgcc
gatgtgagctactacgtgcgaccgggtacgccgctggatggcgaagcgcgcagccgtggc
acgtcggtctacttcccgtctcaggtggttccgatgctgcctgaagtgctctctaacggc
ctgtgttcactgaatcctcaggtcgacaggctctgtatggtttgtgaaatgacgatttcg
gccaaggggcgtctgaccggcttcaaattctacgaagcggtgatgagctcccatgcccgt
ctgacctataccaaagtctggcatatgctgcagggcgaccaggatctgcgtgagcagtac
gcgccgctggttaagcatattgaagagctgcataacctctacaaagtgctggacggcgcg
cgtgaagagcgcggcggtatctcatttgagagtgaagaagctaaattcatctttaatgct
gaacgccgcattgaacgtattgagcagactcagcgtaacgacgcgcacaagctaattgaa
gagtgcatgatcctggcgaacatctccgctgcgcgcttcgttgagaaggccgaggaaccg
gcgctgttccgtatccatgacaaaccgagtacggaagcgattaccgcattccgttcggtg
ctcgcggagctggggcttgagctgcctggcggcaacaagccggagccgcgcgactatgcg
gaattactgacctctatcgccgatcgtccggatgcagagatgctgcaaaccatgctgctg
cggtcgatgaaacaggcgatatacgacccggaaaaccgcggccactttggtctggcgctg
caatcctatgcccacttcacctcgccgattcgccgctatcctgacctttcgctgcatcgc
gcaatcaagtatttactggcgaaagagcagggacataaaggcaatagcaccgagaccggc
ggctggcactacagcatggacgagatgctgcagctgggggcgcactgttcgatgaccgag
cgtcgtgctgatgaagcgacgcgcgatgtttcggactggctgaagtgtgatttcatgctg
gatcaggtgggtaacgtctttaagggcgtgattgccagcgtgaccggctttggtttcttc
gtccgtctggatgagctgtttattgatggtctggtgcacgtctcttccctcgataacgac
tactaccgcttcgatcaggtcgggcagcgtctgattggtgaatccggcggccagacctat
cgactgggcgatcgcgtggaagtgcgcgttgaagcggtcaacatggacgagcgtaaaatt
gacttctcgcttatctccagcgagcgcgcgccgcgcaacgtcggtaagaccgagcgtgaa
aaagcgaagaaaggcggcgcaggtaaatcttccggacgtcgccgtcaggcgggcaagcag
gtaaacttcgagccggatagcgcattccgcaaacagaaaggtcagtctcagccgaaagcc
gctcagccaaaaggcgagaagaaagcgaaaaagccgtcggagaaaacccagaagatagcc
gcagcgaccaaagccaagcgcgcggcgaagaaaaagaatatcgcggagtag
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