Klebsiella oxytoca KONIH1: KONIH1_26135
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Entry
KONIH1_26135 CDS
T03269
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kok
Klebsiella oxytoca KONIH1
Pathway
kok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KONIH1_26135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kok03019
]
KONIH1_26135
03009 Ribosome biogenesis [BR:
kok03009
]
KONIH1_26135
Enzymes [BR:
kok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KONIH1_26135
Messenger RNA biogenesis [BR:
kok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KONIH1_26135
Ribosome biogenesis [BR:
kok03009
]
Prokaryotic type
rRNA helicases
KONIH1_26135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AID92450
LinkDB
All DBs
Position
complement(5465536..5467497)
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AA seq
653 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNIDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
VETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERSGE
DRPKRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGGERREGGRSFGGGERRE
GRGFGGERREGGRGEGRRFSGERREGGRAPRRDDASAPRRDDSAGRRRFGGDA
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagcg
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctg
ctgggcggccgcgacgttctgggtatggcccagacgggtagcggtaaaaccgcagcgttc
tctttaccgctgctgaacaacatcgatcctgagctgagagcaccgcagattctggtgctg
gcgccgacccgcgaactggcggtacaggttgctgaagcaatgacggaattctctaaacat
atgcgcggcgtaaacgtggttgccctgtacggcggccagcgttatgacgtgcagctgcgc
gcgctgcgtcaggggccgcaaatcgttgtcggtaccccgggtcgtctgctggaccacctg
aaacgcggtacgctggatctctctaagctgagcggtctggttctggatgaagctgacgaa
atgctgcgcatgggcttcatcgaagacgtagaaaccattatggcgcagatcccggagggt
catcagaccgctctgttctctgccaccatgccggaagccattcgccgtattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtcgagcgtaacaactcgcccggacatc
agccagagctactggactgcttacggtatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggccgaagcgctggagcgtagcggttatagcagcgctgcgctgaacggcgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagatggtcgtctggatatcctgatt
gcaaccgacgttgcggcccgtggcctcgacgttgagcgtatcagcctggtggttaactac
gatatcccgatggattccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggtcgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaatatt
gaacgtacgatgaagctgaccattccggaagttgaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaattcgcggcgaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgccgaaggcgaagagctggac
gtggaaacgctggccgccgcgctgctgaaaatggctcagggcgaacgtccgctgatcctg
ccgccggatgcgcctatgcgtcctaagcgcgagttccgcgaccgtgacgatcgtttcgaa
cgtcgcggcgaccgtaacgaccgtggcccgcgcggcgaccgtccggaacgcagcggcgaa
gatcgtccgaagcgtgagcgtcgtgacgttggcgatatggaactgtaccgtattgaagtg
ggccgtgatgacggcgttgaagttcgtcacatcgttggcgcaattgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgtttggttctcactccaccatcgaactg
ccgaaaggcatgccgggcgaagtgctgcagcactttacgcgtacccgcatcctgaacaag
ccgatgaacatgcagctgctgggcgatgctcagccgcgtcctgaacgcagcggcgaacgt
cgtggcggcggcgagcgtcgtgaaggcggtcgtagcttcggcggcggtgaacgtcgtgaa
ggccgtggtttcggcggagagcgtcgcgaaggcggccgtggtgaaggtcgtcgtttcagc
ggtgaacgtcgtgaaggtggccgcgcgccgcgccgcgatgatgcttcagctccgcgtcgc
gatgactccgcaggtcgtcgtcgtttcggtggcgatgcataa
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