Klebsiella michiganensis M1: HR38_07590
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Entry
HR38_07590 CDS
T03349
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kom
Klebsiella michiganensis M1
Pathway
kom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HR38_07590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kom03019
]
HR38_07590
03016 Transfer RNA biogenesis [BR:
kom03016
]
HR38_07590
Enzymes [BR:
kom01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HR38_07590
Messenger RNA biogenesis [BR:
kom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HR38_07590
Transfer RNA biogenesis [BR:
kom03016
]
Prokaryotic type
tRNA degradation factors
HR38_07590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AIE68307
UniProt:
A0A0J2H2Y6
LinkDB
All DBs
Position
1577264..1579714
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPFLDRESEKYANPIPSREFILDHLAKREKPASRDELAIELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVAGLKEQVPEEAKQGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKGGAGKSSGRRRQAGKQVNFEPDSAFRKQKGQSQPKA
AQPKGEKKAKKPSEKTQKIAAATKAKRAAKKKNIAE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaccgcgaatctgaaaaatacgctaatccaatcccgagc
cgggaatttatcctcgatcatttagcaaaacgcgaaaaaccggctagccgagatgagctg
gcaatagagctgaatattgaaggcgaagaacaacaagaagcattgcgccgcagactgcgc
gcaatggaacgcgatggtcagctggtctttacgcgtcgtcagtgctatgcgctgccggaa
cgtcttgacctgctgaaagggaccgttatcggtcatcgcgatggttatggcttcctgcgc
gttgaaggccgtaaagatgacctgtatctgtcgtccgagcagatgaaaacctgtattcac
ggcgatcaggtgctggcgcagccgctgggcgccgaccgtaaaggccgtcgcgaagcgcgt
attgtccgcgtactggtgccaaaaacgggccagattgtgggccgctactttaccgatgcg
ggcgttggcttcgtggtgccggatgacagccgcctgagcttcgatatcctgatccccccg
gaacagatcatgggcgcgcggatggggtttgtggtggtggttgagctgacccagcgccca
acccgccgcaccaaagcggtcggcaagatcgttgaggtcctcggcgacaatatgggtacc
ggcatggcggtcgatatggccctgcgcacccatgaaattccctacgtctggccgccagcg
gtcgaaaaacaggtcgccggcctgaaagaacaggtaccggaagaggcgaaacaagggcgc
gttgatttacgcagcctgccgctggtcaccattgatggcgaagacgcccgtgactttgat
gatgccgtgtactgcgagaagaaacgcggcggtggctggcgtctgtgggtggcgatcgcc
gatgtgagctactacgtgcgaccgggtacgccgctggatggcgaagcgcgcagccgcggc
acgtcggtctacttcccgtctcaggtggttccgatgctgcctgaagtgctctctaacggc
ctgtgttcactgaatcctcaggtcgacaggctctgtatggtttgtgaaatgacgatttcg
gccaaggggcgtctgaccggcttcaaattctacgaagcggtgatgagctcccatgcccgt
ctgacctataccaaagtctggcatatgctgcagggcgaccaggatctgcgtgagcagtac
gcgccgctggttaagcatattgaagagctgcataacctctacaaagtgctggacggcgcg
cgtgaagagcgcggcggtatctcatttgagagtgaagaagctaaattcatctttaatgct
gaacgccgcattgaacgtattgagcagactcagcgtaacgacgcgcacaagctaattgaa
gagtgcatgatcctggcgaacatctccgctgcgcgcttcgttgagaaggccgaggaaccg
gcgctgttccgtatccatgacaaaccgagtacggaagcgattaccgcattccgttcggtg
ctcgcggagctggggcttgagctgcctggcggcaacaagccggagccgcgcgactatgcg
gaattactgacctctatcgccgatcgtccggatgcagagatgctgcaaaccatgctgctg
cggtcgatgaaacaggcgatatacgacccggaaaaccgcggccactttggtctggcgctg
caatcctatgcccacttcacctcgccgattcgccgctatcctgacctttcgctgcatcgc
gcaatcaagtatttactggcgaaagagcagggacataaaggcaatagcaccgagaccggc
ggctggcactacagcatggacgagatgctgcagctgggggcgcactgttcgatgaccgag
cgtcgtgctgatgaagcgacgcgcgatgtttcggactggctgaagtgtgatttcatgctg
gatcaggtgggtaacgtctttaagggcgtgattgccagcgtgaccggctttggtttcttc
gtccgtctggatgagctgtttattgatggtctggtgcacgtctcttccctcgataacgac
tactaccgcttcgatcaggtcgggcagcgtctgattggtgaatccggcggccagacctat
cgactgggcgatcgcgtggaagtgcgcgttgaagcggtcaacatggacgagcgtaaaatt
gacttctcgcttatctccagcgagcgcgcgccgcgcaacgtcggtaagaccgagcgtgaa
aaagcgaagaaaggcggcgcaggtaaatcttccggacgtcgccgtcaggcgggcaagcag
gtaaacttcgagccggatagcgcattccgcaaacagaaaggtcagtctcagccgaaagcc
gctcagccaaaaggcgagaagaaagcgaaaaagccgtcggagaaaacccagaagatagcc
gcagcgaccaaagccaagcgcgcggcgaagaaaaagaatatcgcggagtag
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