Candidatus Kinetoplastidibacterium stringomonadis: CONE_0308
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Entry
CONE_0308 CDS
T02471
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
kon
Candidatus Kinetoplastidibacterium stringomonadis
Pathway
kon03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
kon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CONE_0308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kon03400
]
CONE_0308
Enzymes [BR:
kon01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CONE_0308
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CONE_0308
DNA repair and recombination proteins [BR:
kon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CONE_0308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Linker_histone
Zn_ribbon_6
HVO_2753_ZBP
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AGF48120
UniProt:
M1M7W3
LinkDB
All DBs
Position
complement(103842..104684)
Genome browser
AA seq
280 aa
AA seq
DB search
MPELPEIELLKREIDPRVKNRTVLEFKVRNYKLRWPVPEYLPKIITNKNILKCSRRGKYL
LFHFEHGVQIIHLGMSGSIRFIKDEPPGKHDHLEWVFNESIILRMNDPRRFGAVLWHDLK
NDGQLHENKIFKNLGLEPFSLELTDEYLYKKLSNKKKSIKQIILDGHIIVGVGNIYSSES
LFKSRLNPLIPASELSMKDCAKMITSIRETLNDSIGSGGSTIKNYVSTNGESGNYIKNHA
SVYGRDGLPCTLCNSKIIKIKQNGRSTYYCPNCQDVNKKK
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactaccagaaatagagttgctaaaaagagagatagatcctagggtaaaaaac
agaactgttttagagtttaaagttagaaattataaactaagatggcctgtacctgaatat
cttccaaaaattataaccaataagaatattttgaaatgctctcgcagaggaaaatactta
ttatttcattttgaacacggtgtacaaattatacacctaggcatgtctggctcgataaga
tttataaaggatgaacctcctggcaaacatgaccatttagaatgggtttttaatgaatca
ataatattaagaatgaatgatcctaggagattcggagcagtactgtggcatgatctaaaa
aatgatggccaattacatgaaaataaaatttttaagaatttaggcttagagccattttca
ttagaattaacagatgagtatctatataagaaactctcaaacaaaaaaaaatccataaaa
cagattattttagatggtcatattatagtaggagttggaaatatatattcctcagagagc
ttatttaaatcaaggttgaatccattaataccagcctcagaactttcaatgaaggattgt
gctaagatgattacatctataagagaaacacttaatgattctattggatctggtggcagt
actataaaaaattatgtaagtactaatggagaaagtggaaattatataaaaaatcacgct
tctgtttatggtagagacggattaccttgcactttatgcaactctaaaataataaaaata
aagcaaaatggacgttctacttattactgccctaattgtcaagatgtaaataaaaaaaaa
taa
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