Candidatus Kinetoplastidibacterium stringomonadis: CONE_0798
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Entry
CONE_0798 CDS
T02471
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kon
Candidatus Kinetoplastidibacterium stringomonadis
Pathway
kon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CONE_0798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kon03019
]
CONE_0798
Enzymes [BR:
kon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CONE_0798
Messenger RNA biogenesis [BR:
kon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CONE_0798
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGF48521
UniProt:
M1LWS4
LinkDB
All DBs
Position
complement(583352..584695)
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AA seq
447 aa
AA seq
DB search
MNQISIFDKDVKLNSFSSFGLDDSILSVLNEIGYIKPTLIQESAIPNILEGFDFIGAAQT
GTGKTAAFILPIINKLIPFANNSVSPARHLLRSLILVPTRELADQVYECIKLYSKNTKLR
SLVLFGGVDLEQQKDLLHKGCEILVATPGRLIAHINQKNISLINVDTLVLDEADRMLDMG
FIPDVDRIVGMLPKNRQSLLFSATFSEGIRKLGLTYLKDPVEADVTVPNSIADTVQQISY
KIFNNDKYAAMLFLIRSAGMKHAIVFTNTKIGANKLASYLSLNKVNTDCIHGDKTQKERI
RILNDFKLGELDILVATDVVARGLDIVGISCVINFDIPHNAEDYVHRIGRTGRANKEGSA
ISLYYQEEDIYLLEIEKLTKSIIPRLDFCCNDKNDSIHYDRCRKPIILAYNGIRNVGFKD
YLNNNHTVDTNKITAKIAFLLGGSGRS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaattagtatttttgataaagatgtaaaattaaactcattcagcagttttggc
ttagatgactctatattgagtgttctaaatgagattggatatataaaaccaactctaatc
caggaatctgctatccccaatatattagaaggttttgattttattggtgctgctcaaaca
ggaactggtaaaactgcagcttttattttgccaataattaataaattaataccttttgca
aataatagtgtttctccagctcgtcatttattacgttcccttatattggtaccgactaga
gaattagctgatcaggtttacgaatgcataaaactttatagcaagaatactaaattacgt
agcctagtattgtttggtggggtagatttagaacaacaaaaggatctgttgcataaagga
tgtgaaatactagtagcaactcctggtagattaattgctcatataaatcagaagaatata
tccttaattaatgtggatacattagttttagatgaggcagatcgtatgctcgatatgggt
tttatacctgatgttgatagaatagttggaatgctccccaaaaatagacaaagcttatta
ttttcggctacatttagtgaaggtattcgcaaattaggtctaacctatttaaaagatcca
gttgaagctgatgttactgtcccaaattctatagctgatacagttcaacagatttcttat
aagatatttaataatgataaatatgcagctatgttgtttcttatacgcagtgcaggcatg
aaacatgctatagtatttaccaatacgaaaataggtgcaaataagctagctagctattta
tccttaaataaggttaacactgattgtattcatggtgataaaactcaaaaagaaagaata
aggattttgaatgattttaaattaggtgaattagatattttagttgctactgatgttgtt
gctcgtggattagatatagtaggcatttcttgtgtcataaattttgatattcctcataat
gctgaggattatgtacatagaatagggcgtactggaagagctaataaagaagggagcgct
atttctttatattatcaagaagaagatatttatttattagaaatagaaaagctaactaaa
agtataatacctaggttggatttttgttgtaacgataaaaatgactctatacattatgat
agatgtagaaagcctattattcttgcttataatggaataagaaatgttggttttaaagac
tatctgaacaataatcatactgtggatactaataaaattacagcaaaaatagctttttta
cttggaggatctggtagatcctaa
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