Kosakonia oryzendophytica: O9K67_00020
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Entry
O9K67_00020 CDS
T08786
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
koo
Kosakonia oryzendophytica
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
koo03032
]
O9K67_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
koo03400
]
O9K67_00020 (gyrB)
Enzymes [BR:
koo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
O9K67_00020 (gyrB)
DNA replication proteins [BR:
koo03032
]
Prokaryotic type
DNA Topoisomerases
O9K67_00020 (gyrB)
DNA repair and recombination proteins [BR:
koo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
O9K67_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
GyrB_hook
Toprim
HATPase_c
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
WBT58232
LinkDB
All DBs
Position
3753..6167
Genome browser
AA seq
804 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGYCKDIV
VTIHSDNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSQKLELVIQRDNKVHRQIYEHGVPQAPLAVTGDTEKTGTMVRFWPSYETFTNVT
EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI
FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEY
LLENPSDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG
KQEQYIKDDDAMDQYQISIALDGATLHTTEGAPALSGEALEKMVSEYNATQKMIGRMERR
FPRTLLKALIYQPTLTEADLAEEQKVTRWVNALVSDLNENEQHGSQWKFDVRKNNELNHF
EPIIRVRTHGVDTDYLLDNEFVTGGEYRRICTLGEKLRGLMEDDAFIERGERRQPVASFE
QALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPDSRRMLRVTVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctccagtatcaaagtcctgaaagggctggatgcggtgcgt
aagcgcccgggtatgtatatcggcgatacagatgacggcaccggtctgcaccatatggta
ttcgaggtggtagataacgctatcgacgaagcgctcgcagggtactgtaaagacatcgtt
gtcaccatccatagcgataactccgtctccgtacaggatgatggtcgcggtattccgacc
ggtattcacccggaagagggcgtgtctgcggcggaagtgatcatgaccgtactgcacgca
ggcggtaaattcgatgataactcctataaagtttccggcggtctgcacggtgtaggcgtt
tccgtggtaaacgccctgtcgcagaaactggagctggttatccagcgcgataacaaagtc
caccgtcagatttatgaacacggcgtgccgcaagctccgctggccgtaacgggcgatacc
gaaaaaaccggtaccatggtgcgtttctggccgagctatgaaacgttcactaacgtcacc
gaatttgagtatgaaattctggcgaaacgcctgcgcgagctgtcattcctgaactctggc
gtttctattcgcctgcgcgataagcgcgacggcaaagaagatcacttccactacgaaggc
ggcatcaaagcgttcgttgagtatctcaacaagaacaaaacgccgatccacccgaatatc
ttctacttctctaccgaaaaagacggcatcggcgttgaagttgcgctgcaatggaacgac
ggtttccaggaaaatatctactgctttaccaacaacattccgcagcgcgacggtggtact
caccttgccggtttccgcgccgcgatgacccgtacgctgaacgcgtacatggataaagaa
ggctacagcaaaaaagccaaagtcagcgcgaccggcgacgatgcccgtgaaggtctgatt
gcggtggtttccgttaaagtgccggatccgaagttctcctcacagaccaaagataaactg
gtctcctctgaggtgaaatcggcggtagagcagcagatgaacgaactgctggcggaatac
ctgctggaaaacccgtctgatgcgaaaatcgtcgtcggtaaaattatcgatgcggcgcgt
gcccgtgaagcggcgcgtaaagcccgtgaaatgacccgtcgtaaaggtgcgctggatctg
gccggcctgccgggcaaactggcggattgccaggagcgtgacccggctctgtccgaactc
tacctggtggaaggggactccgcgggcggttctgcgaagcagggccgtaaccgtaaaaat
caggcgatactgccgctgaaaggtaaaatccttaacgttgagaaagcgcgcttcgacaag
atgctctcttcgcaggaagtggcgacgcttatcaccgctctgggctgcggcatcgggcgc
gatgagtacaacccggacaaactgcgctatcacagcatcattatcatgaccgatgcggac
gtcgatggttcgcacatccgtacgctgctgctgaccttcttctaccgtcagatgccggaa
atcgttgagcgtggccatgtctacattgctcagccgccactgtacaaagtgaagaaaggc
aagcaggaacagtacatcaaagatgacgatgcgatggatcagtatcagatttccatcgcg
ctggatggcgcaacgctgcacaccaccgaaggtgctcctgcattgtcgggtgaagcgctg
gaaaaaatggtctctgaatacaacgccacgcagaagatgattggtcgcatggagcgtcgt
ttcccgcgtacgctgttgaaagcgctgatttatcaaccgacgctgacagaagccgatctc
gctgaggaacagaaggttacgcgttgggtaaatgcgctggtcagcgatctgaacgagaat
gagcagcacggtagccagtggaagttcgatgtgcgcaagaacaacgagctgaaccatttc
gagccgatcattcgcgtacgtactcacggtgtggataccgattatctgctggataacgaa
ttcgttaccggtggcgaataccgccgtatttgcaccctcggcgagaagctgcgcggtctg
atggaagacgacgcctttatcgaacgtggtgagcgtcgtcagccggttgccagctttgaa
caggcgctggactggttggtgaaagagtcacgtcgtggtcttgctatccagcgttataaa
ggtctgggtgaaatgaacccggaacagctgtgggaaaccaccatggatccggacagccgc
cgcatgttgcgcgtcacggtaaaagatgcgattgctgcggatcagctcttcacaaccctg
atgggggatgccgtagaaccgcgtcgcgcctttattgaagagaacgccctgaaagccgcg
aatatcgatatttaa
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