Kosakonia oryzendophytica: O9K67_03025
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Entry
O9K67_03025 CDS
T08786
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
koo
Kosakonia oryzendophytica
Pathway
koo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O9K67_03025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koo03019
]
O9K67_03025
03009 Ribosome biogenesis [BR:
koo03009
]
O9K67_03025
Enzymes [BR:
koo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O9K67_03025
Messenger RNA biogenesis [BR:
koo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O9K67_03025
Ribosome biogenesis [BR:
koo03009
]
Prokaryotic type
rRNA helicases
O9K67_03025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WBT58788
LinkDB
All DBs
Position
623841..625751
Genome browser
AA seq
636 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSSEEEMDI
ETLAAALLKMAQGERPLILPPDAPMRPRREFRERDDRFERRGDRNDRGPRGDRPERGGED
RPRRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELP
KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRERSERRGGGERRGGGFGGERREGGRGGE
GRRFSGERQEGRGFGGERRAPRRDRDDSAPRRRNDA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctcggttacgaaaaaccatctccgatccaggctgagtgcattccgcacctg
ctttctggtcgtgacgtgctgggtatggcccagactggtagtggtaaaaccgcagcgttt
tccctgccactgcttaacaacatcgatccggacctgcgtgcgccgcagatcctcgtgctc
gctccgacccgcgaactggcggttcaggtcgctgaagcgatgaccgatttctctaaacat
atgcgcggcgtaaacgtggttgctctgtatggcggccagcgttatgacgtgcaattacgc
gccctgcgtcaggggccgcagatcgtcgtcggtacgccgggtcgtctgttggatcacctg
aaacgcggtacgctggatctctctaaactgagcggtctggtactggatgaagccgacgaa
atgctgcgtatgggctttatcgaagacgtagaaaccatcatggcgcagatcccggaaggt
catcagaccgcgctgttctctgcaaccatgccggaagctatccgtcgcatcacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgttaccacgcgcccggacatc
agccagagctactggacggtgtatggcatgcgtaaaaatgaagcgttggttcgcttcctg
gaagcggaagattttgatgcggcgatcattttcgtgcgcaccaaaaacgcaacgctggaa
gtggcggaagcgctggagcgtaacggctataacagcgccgcgctgaacggtgacatgaac
caggcgctgcgtgagcagacgctggaacgcctgaaagatggtcgtctcgatatcctgatt
gcgaccgacgttgcggcgcgtggtctggatgttgaacgcatcagcctggttgtcaactat
gacatcccgatggattctgaatcctacgttcaccgtattggccgtaccggtcgtgcgggt
cgtgctggtcgcgcgctgctgttcgttgagaaccgcgaacgccgcctgctgcgcaatatc
gaacgtacgatgaagctgaccattccggaagtagagctgccgaacgcagaactgctgggt
aaacgccgtttggaaaaatttgccgcaaaagtacagcagcaactggaaagcagcgatctg
gaccagtaccgtgcgctgctggcgaaaatccagccttcttctgaagaagagatggatatc
gaaacgctggccgctgcactgctgaaaatggcgcagggcgaacgtccgctgattctgccg
ccggatgcgccgatgcgtccgcgtcgcgaattccgtgagcgtgatgaccgtttcgaacgc
cgtggcgatcgtaacgatcgtggcccgcgtggcgaccgtccggaacgtggtggtgaagat
cgtccgcgtcgtgagcgtcgtgatgttggtgaaatggaactgtaccgcattgaagtgggc
cgtgatgacggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggcgacatc
agcagccgctacatcggtaacatcaaactgtttggcacccactccactatcgagctgccg
aaaggcatgccgggcgaagtgcttcagcactttacccgcacgcgtattctgaacaagccg
atgaatatgcaactgctgggcgatgcgcagccgcgtgaacgtagcgaacgtcgcggtggt
ggtgagcgtcgtggcggtggtttcggtggcgagcgtcgtgaaggcggtcgcggtggtgaa
ggtcgccgtttcagcggtgagcgtcaggaaggccgtggtttcggtggcgaacgtcgtgca
ccgcgccgcgatcgtgatgacagcgctccacgtcgtcgtaacgatgcgtaa
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