Kosakonia oryzendophytica: O9K67_04220
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Entry
O9K67_04220 CDS
T08786
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
koo
Kosakonia oryzendophytica
Pathway
koo03410
Base excision repair
koo03430
Mismatch repair
koo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
O9K67_04220 (recJ)
03430 Mismatch repair
O9K67_04220 (recJ)
03440 Homologous recombination
O9K67_04220 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
koo03400
]
O9K67_04220 (recJ)
DNA repair and recombination proteins [BR:
koo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
O9K67_04220 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
O9K67_04220 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O9K67_04220 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
WBT59013
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All DBs
Position
869210..870943
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AA seq
577 aa
AA seq
DB search
MKAQIQLRRRVIDDAVELADSLPPLLRRLYASRGVRHDSELERSVKGMLPWHQLNGIDDA
VTHLYNALREGLRIIVVGDFDADGATSTALSVLALRSLGCENVSYLVPNRFDDGYGLSPE
VVDQAHARGAQLILTVDNGISSHAGVERAHALGIPVIVTDHHLPGETLPEAEAIVNPNLR
DCDFPSKSLAGVGVAFYLMLALRSFLRDNGWFDARGLAMPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGRCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNLGEARQLANDLDALNQTRKEIEQGMQAEALTLCEQLERSLDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGVLKGSGRSIQGLHMRDALERLDMLFP
GMMLKFGGHAMAAGLTLEEGRFDEFRQRFGDLVTEWLDPALLQGEIVSDGPLTAQEMTLE
IAEMLREAGPWGQMFPEPLFDGEFRLLQQRLVGERHLKVMLEPVGGGPLLDGIAFNVDTT
CWPDNGVRQVNIAYKLDVNEFRGNRSVQLIIENLWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagctcagatacaacttcgccgccgcgtaattgatgacgcggtggaactggcggat
tcacttccgcctctgctgcgccggttatatgccagccgcggcgtgcggcatgacagcgaa
ctggagcgtagcgtcaaaggcatgctgccgtggcatcagttaaatggcatcgacgatgca
gtaacgcatttgtacaacgcattgcgcgaagggctgcggattattgtcgtcggcgatttt
gacgctgatggcgcaaccagcaccgccctgagcgtgttggcgctgcgttcactagggtgc
gaaaacgtcagctacctcgtgccaaaccgctttgacgatggttatggccttagcccggaa
gtcgtcgatcaggcacatgcacgcggcgcgcagcttattttgaccgtcgataacggtatt
tcgtcccacgctggcgttgaacgggcgcatgcgctgggcattccggtgattgtgaccgat
caccatttgccgggggaaaccttgcccgaggcagaagccattgtgaaccctaacttgcgt
gactgtgatttcccgtcgaaatcgctggcaggtgtgggtgtggcgttttatttgatgctg
gcgttgcgtagtttcctgcgtgataacggttggttcgatgcgcgcggcctggcgatgcca
aatcttgcagaactgcttgacctggtggcattaggtacagtggcggacgtggtgccgctg
gatgccaataaccgcatcctgacctggcaaggtctgagccgcattcgtgccgggcgctgc
cgtcccggaatcaaagcgctgctggaagtggcgaatcgcgatgcgcaaaaactggcggcc
agcgatctcggttttgcgctgggaccgcgcctgaatgcggccggtcggctggacgatatg
tctgtcggcgtggcactgctgctgtgcgataaccttggtgaggcgcgccagcttgccaac
gatttggatgcgctgaaccagacgcgcaaagagattgaacagggtatgcaggctgaagcg
ctcaccctgtgcgaacaactcgaacgcagtcttgatacccttcctggtggcctggcgatg
taccatcctgagtggcatcagggcgttgtgggtattcttgcgtcgcgcatcaaagaacgt
tttcaccgcccggttatcgcctttgcccctgcgggcgacggtgtgttgaaagggtcgggg
cgttccattcagggcttgcatatgcgcgacgcgctggagcggctggatatgttattcccc
gggatgatgctgaaattcggcggtcatgcgatggcggcgggtttaaccctggaggaaggg
cgctttgacgagttccggcaacgttttggcgatctggtcactgagtggctggatccggcg
ttattgcagggcgaaatcgtttctgatgggccattaacggcgcaggagatgacgctggag
atcgccgagatgctgcgtgaagccgggccgtgggggcagatgttcccggaaccgctgttc
gacggtgagtttcgcctgttgcagcagcgtctggtgggggaacgccatcttaaggtgatg
ctggagcccgttggcggcggcccgctactcgacggtatcgcgtttaacgtggataccacc
tgctggccagacaatggggtgcggcaggtgaatattgcttataaactcgatgttaacgag
tttcgcggcaaccgtagcgtacagctgattatcgaaaacctctggccaatttag
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