Kosakonia oryzendophytica: O9K67_10960
Help
Entry
O9K67_10960 CDS
T08786
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
koo
Kosakonia oryzendophytica
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
koo03000
]
O9K67_10960
Transcription factors [BR:
koo03000
]
Prokaryotic type
Helix-turn-helix
Other families
O9K67_10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_30
AAA
AAA_2
Mg_chelatase
HTH_28
HTH_1
HTH_psq
HTH_7
HTH_22
HTH_29
AAA_14
AAA_22
HTH_23
HTH_50
Motif
Other DBs
NCBI-ProteinID:
WBT60245
LinkDB
All DBs
Position
complement(2240856..2242619)
Genome browser
AA seq
587 aa
AA seq
DB search
MPQRARFLAPAQSPVGLPCQLEDSWQRSLSYGLTRDDDAQPWVASTQLKDARAENSWVKH
LVTPMLSRLATELSSHPSIMVMSDATGLVLETHGNNDFLHKAQRYALSPGNLWGEHARGT
NAIGTALALQQHCEVSGGEHYLNRNAGLFCSAAPVFRPDGHIAGVLDLSTPALAPRRDAA
ALIRRAVCEIEHAWTMSALGANRWLLSLHHDQAVLGSARELLLIFEDTTLLGANKLAMDE
FSLTCGHFGVLNIDTLFPGIDVRAGESIQDASNHRRYYTRQTLPARRYSGRGTTQPQDGL
AVEKEKALRIVNAGIALCVTGETGCGKEYLARELYTRSQWRNGNFVAINCAALPEHLIES
ELFGYVPGAFTGASPKGYIGKCREADGGVLFLDEIGDMPLALQTRLLRVLQEKKVTPLGA
NSTWNVNFALICATHQDLTTRVQAGLFREDLLYRIQEFHVRIPPLREWPQLERFIHKLWH
ELGAPCRDLTLSDEVVSALARRPWPGNVRQLLSQLRVLMALAEDGDRITLADLPGEMPLA
RPPEPVVAQVDEQSAIAEAQGNMSLAAKKLGISRSTLYRRLEKRQAG
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaacgcgcacggtttttagcccccgctcaatcccctgtcgggctaccctgtcag
cttgaagactcctggcaacgcagtctcagttacggactgacccgcgatgatgacgcccag
ccgtgggtcgccagtacccagttaaaagatgcgcgagcggaaaacagttgggtaaaacat
cttgttacgccgatgctgtcgcgtctggcgacggagctttcgagtcatccctcgataatg
gtgatgtccgatgccaccggcctggtgctggaaacccacggcaacaacgattttctgcat
aaagcccaacgctacgcgctttcgccgggcaatctgtggggagagcatgcacgcggtacg
aatgcgataggcacagcgctggcgttgcagcaacactgcgaagtctccggcggcgagcat
taccttaaccgcaacgccgggttgttctgctctgctgcaccggtttttcgcccggacggg
cacattgccggtgtgctggatctgtcgaccccggcgctggccccgcggcgcgatgcggcg
gcgcttatccgtcgtgcagtatgtgagatagaacatgcgtggaccatgagcgcgttgggt
gcgaatcgctggctgctcagtctgcatcatgaccaggcggtgctcggtagcgcccgcgaa
ctgctactgatttttgaagacaccacgctgctcggcgcgaacaaactggcaatggatgag
ttctccctgacttgtgggcactttggcgtgctgaatattgacacgttgttccccggcatc
gatgtgcgcgcgggtgagagcatccaggatgccagtaatcaccggcgctattacacccga
caaaccttgccagcccgccgttacagcgggcgcggtacgacgcaaccgcaggatgggctg
gccgtcgaaaaagagaaagcgctgcgtatcgtcaacgcgggtatcgcactgtgtgtgaca
ggcgaaactggttgtggcaaagagtatctggcgcgcgagctctacacccgtagccagtgg
cgtaacggcaactttgtcgccattaactgcgctgcattgccggaacacctgatcgaatcc
gaactgtttggttatgtccctggcgcatttaccggtgccagtccgaaaggttatatcggt
aaatgtcgtgaagccgatggcggcgtgctgtttcttgatgaaataggcgatatgccgctg
gcactacaaacccggttgttacgggtgttgcaggagaaaaaagtgactccgcttggcgca
aacagtacctggaacgtgaattttgccctgatttgcgccacccaccaggatttaaccacg
cgggtacaggcagggctgtttcgcgaggatttgctgtatcgcattcaggaatttcatgtg
cgcattcccccgctgcgcgaatggccacagctcgagcgctttatccacaaattgtggcat
gaactgggcgcgccttgccgcgacctgacgctgagtgatgaggtcgtcagcgcccttgcc
cgccgcccctggcccggcaatgtgcgccagctactcagtcagttacgcgtgttaatggca
ctggcagaagatggcgatcgcatcacgctggccgatctgccgggtgaaatgccgcttgcc
cggccacctgagcctgttgtggcgcaggtggatgagcagagcgcgattgctgaagcgcaa
gggaatatgagtctcgccgccaaaaaactgggcatttcacgcagcacactttaccggcgg
ctggaaaaacgccaggcgggctga
DBGET
integrated database retrieval system
