Kosakonia oryzendophytica: O9K67_19980
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Entry
O9K67_19980 CDS
T08786
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
koo
Kosakonia oryzendophytica
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
koo03009
]
O9K67_19980 (rlmD)
Enzymes [BR:
koo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
O9K67_19980 (rlmD)
Ribosome biogenesis [BR:
koo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
O9K67_19980 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
MTS
RrnaAD
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_4
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_15
Methyltransf_12
FtsJ
Ubie_methyltran
Methyltransf_23
Ribosomal_L22
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
WBT57395
LinkDB
All DBs
Position
complement(4129278..4130579)
Genome browser
AA seq
433 aa
AA seq
DB search
MAQFYSAKRRVTTRQTLTVTVNDLDPFGQGVARHNGKALFVPGLLPGETAEITLKEDKRQ
FARGEVKRRLNDSPERVAPVCPHFGVCGGCQQQHASVALQQRSKSAALARLMKHDVEEVI
AAQPWGYRRRARLSLSWQSKTQQLAMGFRKAGDNDIVSITRCPVLVHRLEALLSPLRECL
AQLKAVRHLGHVELVDADNGPLMVLRHTGPLATDDKEKLERFSHSHDLALYLAPQSEILE
HVCGDVPWYSSEGLRLTFSPRDFIQVNDGVNQQMVARALMWLDVQPDDRVLDLFCGMGNF
TLPLAKRAGSVVGVEGVAGLVAKAQQNAQQNGLHNVTFFHENLEDDVTTQPWARQGFDKV
LLDPARAGAAGVMQHIIKLSPQRVVYVSCNPATLARDSEALLHAGYQIQQLAMLDMFPHT
GHLESMVLFVNHK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgacgcgtgacgactcgtcaaacactaacggtaacc
gtaaatgatcttgatccctttggtcagggcgttgcgcgccataatggtaaggcgttgttt
gttcccggacttttgcctggcgagacggcagaaatcacgctgaaagaggacaaacggcaa
tttgcgcgcggtgaggtaaaacgccgcctgaacgacagcccggagcgtgtagcgcccgtg
tgcccgcactttggcgtttgcggggggtgccagcagcagcacgccagtgttgcactgcaa
cagcgcagtaaaagcgccgcgctggcacgtttgatgaaacacgatgtcgaagaggtgatt
gccgctcagccgtgggggtaccgccgacgcgcacgcttaagcctgagctggcagtcaaaa
acgcaacaactggcgatgggctttcgtaaagcgggtgacaacgacatcgtctctatcacg
cgttgcccggtgttggtgcatcggcttgaagcattgctctccccgctgcgcgaatgtctg
gcgcagttgaaagcggtgcgtcatcttgggcatgttgaattggttgatgcagacaacggt
ccgctgatggttttacgccataccggcccgttagccactgatgataaagaaaaactggaa
cggttttcgcattctcatgacctggcgctgtatctggcgccgcaaagcgagatactggaa
catgtgtgcggagatgttccctggtacagctctgaagggctacgcttaacgttcagtccg
cgggattttatccaggtgaacgacggagtgaaccaacagatggtcgcccgtgcattgatg
tggctggatgtacagccagacgatcgcgtactggatctgttctgcggaatggggaatttc
acgttaccgttggcgaaacgcgcgggcagtgtcgtcggcgtagaaggcgttgccgggctg
gtggcgaaagcgcagcaaaacgcgcaacagaatggcttgcacaatgtgacattttttcat
gaaaatctggaagatgatgtcacaacgcagccgtgggccaggcagggttttgacaaagtg
ttgctcgatcctgcgcgcgccggtgctgcaggcgtgatgcaacatattataaaattgtcg
ccgcagcgggtggtgtacgtttcctgtaatcccgccacccttgcccgcgacagtgaagcg
cttttacatgcgggttaccagattcagcagttggcgatgctggacatgttcccgcacaca
ggccacctggagtcgatggtgttgtttgtgaatcacaaatga
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