Kosakonia oryzendophytica: O9K67_23315
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Entry
O9K67_23315 CDS
T08786
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
koo
Kosakonia oryzendophytica
Pathway
koo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O9K67_23315 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
koo03021
]
O9K67_23315 (rpoC)
03400 DNA repair and recombination proteins [BR:
koo03400
]
O9K67_23315 (rpoC)
Enzymes [BR:
koo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O9K67_23315 (rpoC)
Transcription machinery [BR:
koo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O9K67_23315 (rpoC)
DNA repair and recombination proteins [BR:
koo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O9K67_23315 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WBT58004
LinkDB
All DBs
Position
complement(4843426..4847649)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKTVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTSGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSEFLEGEQVEYSRVKIANRELEANGKIGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagactacgagtgcctgtgcggtaagtacaagcgcttgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgccgtgag
cgcatgggccacatcgagctggcgtctccgaccgcccacatttggttcctgaaatctctg
ccgtcccgtatcggtttgctgctggatatgccgctgcgtgatatcgagcgcgttctgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaatctggaacgtaaccagatcctg
accgaagaacagtacctggacgcgctggaagagttcggtgacgaattcgacgcgaaaatg
ggcgccgaagctattcaggccctgctgaaaagcatggatctggagcaggaatgcgaacaa
ctgcgcgaagagctgaacgaaactaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaaactgctggaagcgttcgtacagtctggtaacaaaccggagtggatgatcctgact
gttctgccagtgctgccgccggacctgcgtccgctggttccgctggacggtggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgttggatctggcggcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggccgccgcggtcgtgcgatcaccggttccaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atttacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggatgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtattcaggcgtttgaaccggtt
ctgatcgaaggtaaagctattcagctgcacccgctggtttgtgcagcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatctatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcactgaatacgaaaaagatgctaac
ggcgaattcgttgcgaaaaccagcctgaaagacacgaccgttggtcgtgcgattctgtgg
atgatcgtgccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcc
atctccaaaatgctgaacacctgttaccgcattctgggcctgaaaccgaccgttattttt
gctgaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgatgacatggtcatcccggcgaaaaaacacgagatcatcagcgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtaactgctggcgaacgctataac
aaagtcatcgatatttgggctgcggcgaacgatcgcgtatccaaagcgatgatggacaac
ctgcagactgaaaccgtgattaaccgtgacggtgttgaagagcagcaggtttcctttaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcccagattcgtcagctt
gctggtatgcgtggtttgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacacacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgactcgtcgtctg
gtagacgttgcgcaggacctggttgtaaccgaagacgattgtggcaccctcgaaggtatc
accatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgacagctgaagacattctgaaaccgggtacggcagacattctggttccgcgc
aacacgctgctgcacgagcagtggtgtgacctgctggaagcgaactccgtcgactccgtt
aaagtgcgttccgttgtatcttgtgacaccgactttggtgtatgtgcacactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcggcg
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgcctg
agcaacgcgaagacggttgttaactccagcggtaaactggttatcacctcccgtaacact
gagctgaaattgatcgacgaatttggtcgtaccaaagaaagctacaaagtgccttacggc
tccgtgatggcgaaaggtgatggtgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccgcataccatgccggttatcactgaagtggctggtttcatccgcttcactgacatg
atcgacggccagaccattacacgtcagaccgacgaactgaccggtctgtcttcactggtg
gttctggactccgcagagcgtacctctggtggtaaagacctgcgtccggcgctgaaaatc
gttgacgctaacggcaatgatgttctgattccgggcaccgacatgccggcgcagtacttc
ctgccaggtaaagcgatcgttcagttggaagatggcgttcagatcagctctggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaattctggctgaaatcagc
ggtattatttccttcggtaaagagaccaaaggtaaacgccgtctggtgatcacgccggtt
gacggtagcgagccgtacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcgccgcacgacatt
ctgcgtcttcgtggtgtacacgcggtaacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagatcaacgataagcatatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgtgaacgcgggcagctccgagttcctcgaaggtgagcaggtt
gaatactctcgcgttaagatcgctaaccgcgaactggaagcgaacggcaaaatcggtgca
acgtatgcacgcgatctgctgggtatcaccaaagcgtctctggctaccgagtccttcatc
tccgcggcatcgttccaggagaccacgcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgtgatcgtgggtcgtctgatcccggccggt
actggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgctggcgaactgccggca
gcaccgcaggtaactgcggaagatgcaagcgcgagcctggcagaactgctgaacgcaggt
ctgggtggctcagacaacgagtaa
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integrated database retrieval system
