Kosakonia oryzendophytica: O9K67_23570
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Entry
O9K67_23570 CDS
T08786
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
koo
Kosakonia oryzendophytica
Pathway
koo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O9K67_23570 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koo03019
]
O9K67_23570 (recQ)
03400 DNA repair and recombination proteins [BR:
koo03400
]
O9K67_23570 (recQ)
Enzymes [BR:
koo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O9K67_23570 (recQ)
Messenger RNA biogenesis [BR:
koo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O9K67_23570 (recQ)
DNA repair and recombination proteins [BR:
koo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
O9K67_23570 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WBT58044
LinkDB
All DBs
Position
complement(4898232..4900058)
Genome browser
AA seq
608 aa
AA seq
DB search
MAQAEVLNQESLAKQVLQETFGYQQFRPGQQDIIDTVLGGRDCLVVMPTGGGKSLCYQIP
ALVLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVLAGCRNGHIRLLY
IAPERLMLDNFLDQLRQWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQMLPAVPFMAL
TATADDTTRRDIVNLLGLNNPLIQVSSFDRPNIRYMLMEKFKPLDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGFSAAAYHAGLENDVRARVQEQFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPRQYDGLQDAQKAL
SAIYRVNQRFGMGYVVEVLRGANNQRIREMGHDKLPVYGIGRDHSHEHWVSVIRQLIHLG
FATQNIAQHSALQLTEAARPILRADVPLMLAVPRMAALKSKVMQKAAVGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLSVNGVGTRKLERFGQEFMALIR
AHVDGEEE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtattgaatcaggaatcgctggctaaacaggttttgcaggaaacc
tttggctaccagcagttccgcccgggccaacaggacatcatcgatacggtgcttggcggt
cgcgactgcctggtggtgatgccgacaggcggcgggaaatcgctgtgctatcagatcccg
gcgctggtattggatggcctgacggtggtggtatcgccgctgatctcattgatgaaagac
caggtcgatcaactccttgccaatggcgtggcggcggcgtgcctgaattcaacgcaaagc
cgcgagcagcagcttgaggtactcgcagggtgtcgcaacgggcatatccggttgttgtat
atcgcccccgaacggctgatgctcgacaacttcctggatcagcttcgccagtggaacccg
gtattgctggcggtggatgaagcacactgtatttcccaatgggggcacgatttccgcccg
gaatacgctgcgctgggtcagttgcgccagatgctccccgccgtgccgtttatggcactg
accgccaccgcagacgacacgacccgccgcgatattgttaaccttctggggcttaacaac
ccgcttattcaggttagcagcttcgatcgtcctaacatccgctacatgctgatggaaaaa
ttcaagccgcttgatcaactcctgcgctatgtgcaggagcaacgcggcaaatccggcatt
atttactgcaacagtcgcgcgaaagtggaagacaccgccgcgcgtctgcaaagccgcggt
tttagcgccgcagcctaccatgcgggtctggagaacgatgtgcgtgcacgcgtgcaggag
cagttccagcgcgacgatctgcaaatcgtggtggcgacggtggcgttcgggatgggcatc
aataaacccaacgtccgttttgtggtgcatttcgacattccgcgaaatatcgaatcctat
tatcaggaaacaggccgcgccgggcgagacggcctgccagcggaagcgatgctgttttac
gatccggcggatatggcatggctgcgtcgctgcctggaggagaaacccgccgggccgtta
caggatattgaacggcataaacttaatgcgatgggcgcgtttgctgaagcgcaaacctgc
cgccgtttggtgctgctgaattactttggcgaagggcgacaggagccgtgcggcaactgt
gatatttgtctcgacccaccacggcagtatgacggtttgcaggacgcgcaaaaagcgctg
tcggcgatttatcgcgtgaaccagcgctttgggatggggtacgtggtggaagtgctgcgc
ggcgccaataatcagcggatccgcgaaatggggcacgacaaattaccggtttacgggatc
gggcgcgatcatagccatgagcattgggtcagcgtgatccgccagttgatccatttaggc
ttcgccacgcagaacatcgcccagcactccgcgctgcaactcaccgaggccgcgcgaccg
atattgcgcgcggatgtaccgctgatgctggccgtgccgcgtatggcggcgctgaagtca
aaagtcatgcaaaaagcggccgtgggtaactatgatcgcaagctgtttgccaaattacgt
aaactgcgtaaggccattgccgacgaagagaatattccaccgtatgtcgtatttaacgat
gctacgctgattgaaatggctgagcagatgccgctctcgcccggggaaatgctcagcgtg
aacggcgtgggaacgcgtaagctcgaacgtttcgggcaggaatttatggcgctaatccgt
gcccatgtcgacggtgaagaggagtag
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