Kosakonia oryzendophytica: O9K67_23750
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Entry
O9K67_23750 CDS
T08786
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
koo
Kosakonia oryzendophytica
Pathway
koo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O9K67_23750 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koo03019
]
O9K67_23750 (rhlB)
Enzymes [BR:
koo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O9K67_23750 (rhlB)
Messenger RNA biogenesis [BR:
koo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O9K67_23750 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WBT58073
LinkDB
All DBs
Position
4933856..4935124
Genome browser
AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIEDRKVNQPRAIIMAPTRELAVQIHADAEPLAQATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYTKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPATDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
DEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALLSELPPPKRLTRPRSGNGPRRSGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacccaaaagtg
attgaggcccttgaaaataaagggtttcataattgcacgcctattcaggcactggccctt
ccgctgacgctggcgggccgggatgttgcaggtcaggcgcaaaccggtaccggcaaaacg
atggcgtttttaacgtcaacgttccactatctcctttctcacccggcgatcgaagaccgc
aaagtgaaccagccgcgcgcaattattatggcgccgacccgtgaacttgcggtgcaaatc
cacgccgatgcggagcccctggcgcaggcgacaggtctgaaactgggcctggcttacggc
ggtgatggctacgacaagcagctgaaagtactggaaagcggcgtcgatattctgatcggc
accactggccgccttattgattacaccaaacagaaccatattaacctgggcgcgatccag
gtcgtggtgctggacgaagccgatcgtatgtacgatctgggctttataaaagatatccgt
tggttgttccgccgtatgccggcaaccgaccagcgtcttaatatgctgttctccgcgacc
ctctcttaccgagtgcgtgaactggcgttcgagcaaatgaacaacgctgaatacgtggaa
gtcgaaccggaacagaaaaccggccaccgtatcaaagaagagctgttctatccgtccaat
gatgaaaaaatgcgtttactgcaaacgctgattgaagaagagtggccggatcgtgcaatc
atcttcgccaacactaaacaccgttgtgaagatatctggggccacctggccgcagatggt
caccgtgttggtttattgacgggcgatgtggcgcagaaaaaacgcctgcgcattcttgat
gaattcacgcgtggcgatctcgatattctggtagcaacagatgtggcggctcgtggtctg
catattcctgccgtaacacatgtttttaactacgatctgccggacgattgcgaagattac
gtgcaccgtatcggtcgtaccggtcgcgctggcgcaagcggcaattccatcagcctggcc
tgtgaagaatacgcgctgaacctgcccgctattgaaacctatattggccactccattccg
gtcagtaaatacaacccggatgccctgctcagcgaactgccgccgccaaaacgcctgacg
cgcccccgctctggcaacggcccgcgtcgcagtggtggcgcaccacgtaatcgtcgtcgt
tcaggttaa
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