Kosakonia oryzae: AWR26_03145
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Entry
AWR26_03145 CDS
T04433
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
kor
Kosakonia oryzae
Pathway
kor02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
kor00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AWR26_03145 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kor03021
]
AWR26_03145 (rpoD)
Transcription machinery [BR:
kor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AWR26_03145 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMEM120A-B
DNA_ligase_A_N
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
ANI81190
UniProt:
A0AA94H637
LinkDB
All DBs
Position
complement(648292..650136)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETTADTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEQARLSDLITGFVDPNAEEDLAPTA
THVGSELSSEEMDDDDEDEDEDDDDNSDDDNSIDPELAREKFGELRTQYELTRDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRIMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAALAMNKPWSEKLHEVTEEVQRSLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcaccg
gatgctgatgatttgctgctggctgagaccactgccgacacggacgatgacgctgccgaa
gcggctgcgcaagtgctttccagcgtggaatctgaaatcgggcgcacgaccgacccggtt
cgcatgtatatgcgtgaaatgggtaccgttgaactgctgacccgtgaaggcgaaattgac
atcgccaaacgtatcgaagacgggattaaccaggttcagtgctccgttgccgagtacccg
gaagccattacctatctgttagaacaatacgaccgcgtcgaagcggaacaggcgcgtctg
tccgatttgatcaccggctttgtcgatccgaatgcggaagaagatcttgcgccaacggca
acgcatgtcggctctgagctctccagcgaagagatggatgacgacgatgaagacgaagat
gaagacgacgatgacaacagcgatgatgacaacagcatcgatcctgagctggcacgtgaa
aaattcggcgagctgcgtacccagtacgaactgactcgtgacacgatcaaagccaaaggc
cgcagccatgctgcagcgcaggaagagatcctcaagctgtctgaagtcttcaaacaattc
cgtctggtgccgaaacagttcgactacctggtgaacagcatgcgtatcatgatggatcgc
gtgcgcactcaggaacgcatcatcatgaagctgtgcgttgaacagtgcaaaatgccgaag
aaaaacttcattacgctgttcaccggcaatgaaaccagcgaaacctggttcaatgccgcg
ctggcgatgaataagccgtggtccgaaaagctgcatgaagtgacggaagaagttcagcgc
agcctgcaaaaactgcaacagattgaagaagaaaccggcctgaccatcgagcaggtaaaa
gatatcaaccgtcgtatgtccatcggcgaagcgaaagcgcgccgtgcgaagaaagagatg
gtggaagcgaacctgcgtctggttatttctatcgccaagaaatacaccaaccgtggtctg
caattcctcgatctgattcaggaaggcaacatcggtctgatgaaagcggttgataagttc
gaataccgccgtggttacaagttctccacctacgcaacctggtggatccgtcaggcgatt
acccgctccatcgcggatcaggcgcgcactatccgtattccggtgcatatgattgagacc
attaacaaactcaaccgtatctcccgccagatgctgcaggaaatgggtcgcgagccgacg
ccggaagagctggccgaacgcatgttgatgccggaagataaaatccgcaaggtgctgaaa
atcgccaaagagccaatctccatggaaacaccgattggtgatgatgaagattcgcatctg
ggtgattttatcgaggataccaccctcgagctgccgctggactctgccaccaccgagagc
ctgcgtgcggcgacgcacgacgtgctggctggtctgacagcccgtgaagcgaaagtactg
cgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaacag
tttgacgttacccgcgaacgtatccgccagatcgaagcgaaagcgctgcgtaaactgcgc
cacccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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