Kosakonia oryzae: AWR26_15520
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Entry
AWR26_15520 CDS
T04433
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kor
Kosakonia oryzae
Pathway
kor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWR26_15520 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kor03019
]
AWR26_15520 (rne)
03009 Ribosome biogenesis [BR:
kor03009
]
AWR26_15520 (rne)
Enzymes [BR:
kor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AWR26_15520 (rne)
Messenger RNA biogenesis [BR:
kor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AWR26_15520 (rne)
Ribosome biogenesis [BR:
kor03009
]
Prokaryotic type
rRNA processing factors
AWR26_15520 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ANI83498
UniProt:
A0AA94H1A9
LinkDB
All DBs
Position
3285740..3288895
Genome browser
AA seq
1051 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTQEVHAIVPVQVASYLLNEKRAAVSAIEARQGGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMALPSEEEYAERKLPEQPALATFVMPDVPPA
PPAPAAAAPAAKAEPAAAVQPATPGLFSRFVSALKGLFAGEEAPAAVEASEEKKPAKQDR
QQDRRKPRQSNRRDRNERRDGRAEGSEAREGRENRENREGREENRRNRREKSQQNAETRE
ARQPVAVEETEKTKQRDEQQPSRRERNRRRNDDKRQAQQDVKELNRADQPEQETEQEERV
QVMPRRKQRQLSQKVRIEDAQPADATEETIAQSTEVAKVDLPAVVETSQDQDENAEAREN
AMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSAMPLTVACASPEMASGKVWIRYPVARTQ
EEQAKEIAAEENVAVEQDVAPMVAEAALVSAVQTEVVEQQPAAEAETVAPAAETEVTEPV
VVEPQQTVAEPETVAVETTHPEVIAAPVDEQPQLIAEEDRVVAKEVVEEAAPAQEAPAPV
VETAPVVSEEAPAPVAAPVVEPVKETVAPVVARRVATAPMTKAPAPAYVPEAPRHSDWVR
PDFNFEGKGSAGGHSATHAATAPATKPPSVD
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtccggggcacgaacagaaaaaagcgaac
atctataaaggtaaaatcacccgcattgagccgagtcttgaagccgctttcgtggattac
ggtgctgaacgacacggtttcctccccctcaaagaaatcgcgcgcgaatatttccctgcc
aattacaacgctcatggccgtccgaatatcaaagacgtgctgcgtgaaggccaggaagtt
atcgtccagattgataaagaagagcgtggtaataaaggcgctgcactgaccacgtttatt
agccttgcgggcagttatttggtgttaatgccgaataacccgcgcgcaggcggcatctct
cgccgcattgaaggtgacgatcgtactgaattaaaggaagccctctccagcctcgaactg
ccggatggcatggggctgattgtacgcacagctggtgtgggtaaatccgccgaagcgctg
caatgggatctgagtttccgcctgaaacactgggaagcgatccagaaagccgctgaaagc
cgtccggcgccgttcctgatccatcaggaaagcaacgtcatcgttcgcgcattccgtgac
tacctgcgccaggacattggtgaaatcctcatcgacaacccgaaagtgcttgagctggcc
cgccagcacatctccgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaattccgctgttcagccactatcagattgagtcacagattgaatccgccttccag
cgtgaagtgcgcctgccgtccggcggctctatcgttatcgattccacggaagcactgacg
gctatcgatatcaactccgcgcgcgcaacccgcggtggcgatatcgaagaaaccgccttc
aacaccaacctggaagcagccgatgagatcgcccgccaactgcgcctgcgcgatcttggc
ggtctgattgttattgacttcatcgatatgacgccggttcgccatcagcgtgctgttgag
aaccgcctgcgtgaagccgtgcgtcaggaccgcgcccgtattcagatcagccatatttcc
cgctttggcctgctggagatgtctcgtcagcgcctcagtccgtcgctgggcgaatccagc
catcacgtctgcccacgttgtagcggcaccggtaccattcgtgataacgaatcgctgtcg
ctgtcgatcctgcgcctgatcgaagaagaagcgctgaaagagaacacccaggaagtgcac
gcgattgtgccggtccaggtcgcctcttatctgctgaacgaaaaacgtgctgcggtcagc
gctatcgaagcccgccagggcggcgtacgctgcgtgatcgtgccgaacgaccagatggaa
acgccgcactactccgtactgcgcgtgcgtaaaggcgaagagacgccgaccctgagctat
ctgctgccgaagctgcacgaagaagcgatggcgctgccgtcggaagaagagtatgccgag
cgtaaactgcctgagcagcctgcactggcgacgttcgtcatgccggatgttccgcctgct
ccgccagcgcctgctgctgccgcacctgctgccaaagcagaacctgccgccgctgtacaa
cctgcaactccggggctgttcagccgtttcgtttcggcactgaaaggcctgtttgcgggc
gaagaagccccggcagctgtcgaagccagtgaagagaaaaaaccggcgaaacaagatcgc
cagcaggatcgccgcaaaccgcgccagagcaatcgtcgcgatcgtaatgaacgccgtgat
ggccgcgctgaaggcagcgaggcgcgcgaaggtcgtgagaatcgcgaaaaccgcgaaggt
cgtgaagagaaccgccgtaatcgccgcgagaaatcacagcagaacgcggaaactcgcgaa
gcgcgtcagccagtagcggtcgaagagacggaaaaaaccaaacagcgcgatgagcagcaa
ccgtcacgccgtgaacgcaaccgtcgccgtaacgatgacaaacgtcaggcgcagcaggat
gttaaagaactgaaccgtgccgatcagcctgagcaggaaactgaacaggaagagcgtgtg
caggtgatgccgcgtcgtaaacagcgtcaactgagccagaaagttcgcattgaagatgcg
cagcctgcagatgctaccgaagagacgatcgctcagagtactgaagtggcgaaagtcgat
ctcccggccgttgtggaaaccagccaggatcaggatgagaatgcagaagcgcgcgaaaat
gcgatgcctcgccgttctcgtcgttctccgcgtcacctgcgcgtcagcggccagcgccgt
cgtcgctatcgtgacgagcgttatccgttgcagtcagccatgccgctgaccgtcgcatgt
gcttcgcctgaaatggcttccggtaaagtatggatccgctatccggttgcgcgcactcag
gaagagcaggcgaaagagatcgcggcagaagagaacgttgccgttgagcaggatgttgca
ccgatggtggctgaagccgcgttggttagtgctgtacagaccgaagtggttgagcagcaa
cctgcagcagaagcagaaactgtagcgccagccgctgaaacggaagtgactgaacctgtc
gttgtcgagccgcagcagactgtcgctgagccagaaaccgttgcggtagaaaccacccat
ccggaggttatcgccgcgccggttgatgagcagccgcaactgattgctgaagaagatcgt
gtcgtcgccaaagaggttgtggaagaagccgcgccagcgcaggaagccccggcgccagtt
gttgaaaccgcaccggttgttagcgaagaggccccggccccggttgcagcacccgttgtt
gaaccggttaaagaaacggtggcgcctgtcgtcgcccgtagagtagccactgcgccgatg
accaaagcgcctgctccggcctatgtaccggaagcgccgcgtcacagcgactgggttcgt
ccggacttcaacttcgaaggtaaaggttccgcgggcggtcacagcgccacccacgctgcc
accgcaccggcaacgaaaccaccttctgttgactaa
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