Kosakonia oryzae: AWR26_25385
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Entry
AWR26_25385 CDS
T04433
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kor
Kosakonia oryzae
Pathway
kor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AWR26_25385 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kor03021
]
AWR26_25385 (rpoC)
03400 DNA repair and recombination proteins [BR:
kor03400
]
AWR26_25385 (rpoC)
Enzymes [BR:
kor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AWR26_25385 (rpoC)
Transcription machinery [BR:
kor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AWR26_25385 (rpoC)
DNA repair and recombination proteins [BR:
kor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AWR26_25385 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QSV12372
LinkDB
All DBs
Position
complement(5136206..5140429)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGIVMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLNEQWCDLLEVNSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKTVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRDLEANGKIGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPV
APQVTAEDATASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcctggtctttcggtgaagtgaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgtgacggtcttttctgcgcccgt
atttttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgagctggcatctccgaccgcgcacatctggttcctgaaatccctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaatctggaacgtaaccagatcctg
accgaagaacagtacctggacgcgctggaagagttcggtgacgaattcgacgcaaaaatg
ggcgccgaagctattcaggccctgctgaaaagcatggatctggaacaagagtgcgaacag
ctgcgcgaagagctgaacgaaactaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaaactgctggaagccttcgtacagtctggtaacaaaccggaatggatgattctgact
gttctgccagtgctgccgccggacttgcgtccgctggttccgctggatggtggtcgtttc
gctacgtcggatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatttggcggcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtccgctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaaacgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcgctggaactgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtgctgctgaaccgtgcgccgactctgcaccgtttgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacattctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgttctgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttaccgtgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatatgaaaaagatgctaac
ggcgaattcgttgcgaaaaccagcctgaaagacacgaccgttggtcgcgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaaaccgaccgttattttt
gctgaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatctgttggt
atcgatgacatggtcatcccggcgaaaaaacatgagatcatcagcgaagcggaagccgaa
gttgctgagattcaggagcagttccagtctggtctggtaaccgctggcgaacgctacaac
aaagttatcgatatttgggctgcggcgaacgatcgcgtatccaaagcgatgatggacaac
ctgcaaaccgaaaccgtgattaaccgtgacggtcaggaagagcagcaggtttcctttaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcccagattcgtcagctt
gctggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttacctgactcgtcgtctg
gtcgacgtggcgcaggacctggtggtcaccgaagacgattgtggcaccctcgaagggatc
gtcatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgactgcggaagacgttctgaagccgggtaccgctgatattctggttccgcgc
aacacgctgctgaacgaacagtggtgtgacctgctggaagtcaactccgttgacagcgtc
aaagtacgctccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgcctg
agcaacgcgaagacggttgttaactccagcggcaaactggttatcacctcccgtaacact
gagctgaaactgatcgacgaattcggtcgtactaaagaaagctataaagtgccttacggt
gcggtaatggcgaagggtgatggcgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccgcacaccatgccagttatcaccgaagtgagcggtttcattcgcttcaccgacatg
atcgatggtcagacgattacccgtcagaccgacgaactgaccggtctctcctcgctggtg
gttctggattctgcagaacgtaccactggtggtaaagacctgcgtccggcgctgaaaatt
gttgatgcgcagggcaacgacgttctgatcccgggcaccgacatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcagctcgaagatggcgtacagatcagctctggtgacacc
ctggcgcgtattccgcaggaatctggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaattctggctgaaatcagc
ggtatcatttccttcggtaaagaaaccaaaggtaaacgccgtctggtgatcacgccggtt
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgcgtagaacgtggtgacgtggtttccgacggtccggaagcgccgcacgacatt
cttcgtctgcgtggtgttcacgcggtaacccgttacatcgtgaacgaagtgcaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgttaacgcaggaagctccgacttcctggaaggtgagcaggtt
gaatactctcgcgttaagatcgccaaccgcgatctggaagcgaacggcaaaatcggtgca
acctatgcacgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagacgactcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgccgtcgcgccgctggcgaactgccggta
gcaccgcaggttactgcggaagatgcgactgcgagcctggcagaactgctgaacgcaggt
ctgggtggttccgacaacgagtaa
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integrated database retrieval system
