Kordia sp. SMS9: KORDIASMS9_01678
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Entry
KORDIASMS9_01678 CDS
T05562
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
kos
Kordia sp. SMS9
Pathway
kos03030
DNA replication
kos03410
Base excision repair
kos03420
Nucleotide excision repair
kos03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KORDIASMS9_01678 (polA)
03410 Base excision repair
KORDIASMS9_01678 (polA)
03420 Nucleotide excision repair
KORDIASMS9_01678 (polA)
03440 Homologous recombination
KORDIASMS9_01678 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kos03032
]
KORDIASMS9_01678 (polA)
03400 DNA repair and recombination proteins [BR:
kos03400
]
KORDIASMS9_01678 (polA)
Enzymes [BR:
kos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KORDIASMS9_01678 (polA)
DNA replication proteins [BR:
kos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KORDIASMS9_01678 (polA)
DNA repair and recombination proteins [BR:
kos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
KORDIASMS9_01678 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KORDIASMS9_01678 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
RNase_H_2
HHH_2
HHH
HHH_5
5-FTHF_cyc-lig
Pro-kuma_activ
Motif
Other DBs
NCBI-ProteinID:
AXG69456
UniProt:
A0A345GYR8
LinkDB
All DBs
Position
complement(1878484..1881312)
Genome browser
AA seq
942 aa
AA seq
DB search
MADQKRLFLLDAYALIFRGYYAFIKNPRINSKGFDTSAILGFTNSLLDVIKRERPDHLAV
CFDRGGSVDRVEVFPEYKANRQETPEPISLAIPYIEKILKAMHIPIIVKTGYEADDIIGT
LSKKAEKEGYQTFMVTPDKDFAQLVSENIFMYRPRFGGGYETWGIPEVQEKFGVERPEQV
IDFLGMMGDAVDNIPGLPGVGEKTAKKFLAAYGSMEGLLENTHELKGKMKEKVEANAELG
LLSKQLATIMLDVPVEFHEENFEMCDPDLDAVKEIFNELEFRRLLDNLIKTFASPKENSA
EANTTTSKTTKKAAPNGQFDLFATPGSGNTSEETTASGYQTIQNTDHFYQLANTPMSRKM
LLQKLLKQQSVCFDTETTGLKALEVELVGVAFSWEKGKGYYVAFPEDQAETKEILEEFRP
FFESTTIEKVGQNLKYDIKVLSNYNMPVKGKLFDTMIAHYLINPDMRHNMDVLSETYLNY
QPLSIVELIGKKGKNQLSMREVPLDQQTEYAVEDADITYQLKEHFIKELESGHLTKLFTD
VEIPLVSVLSAMEIEGINLDPDFLGGLSKDLAIDIERLEKGIYELAGEEFNIGSPKQLGP
ILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHQIVADILEWRQYRKLQSTYVDALPNE
INPKTKRVHTVYAQAVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYVLLAADY
SQIELRIIAALSEEDTMIQSFKDGADIHASTASRVFNVALEDVTREQRSNAKTVNFGIIY
GVSAFGLSNQTSLSRSESKELIDTYYETYPKLKAYMANQVAFARENGYVETVLGRRRYLK
DINSRNAIVRGAAERNAVNAPIQGSAADIIKLAMINIYNRFEAEGFQSKMLLQVHDELVF
DAHKDELETIKTIIKEEMEKAFKLAVPLDVEIGIGQNWLEAH
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccaaaaacgactttttttactcgatgcatacgcgcttatttttagaggatat
tatgcttttataaaaaatcctagaatcaactcgaaagggtttgacacttccgcaattttg
ggttttacaaactctttgttagacgtgattaaacgcgaacgaccagatcatttggcagtt
tgttttgatcgtggtggaagtgtagaccgtgtggaagtgtttccagaatacaaagcaaat
cgacaagaaacaccagaacccatctcgcttgccattccgtatatagaaaagattctgaaa
gccatgcacattccaattattgtaaaaactggatatgaagctgatgacataattggaaca
ctttctaaaaaggcggaaaaagaaggctatcaaacatttatggtcacgccagataaagat
tttgcgcagctagtctcagaaaatatttttatgtatcgtccgcgatttggtggtggttat
gaaacgtggggaattcccgaagtacaagaaaaatttggagtagaacgcccagaacaagta
attgactttttaggaatgatgggcgatgctgtggataatattcctggattgcctggcgtt
ggagaaaaaaccgccaaaaagtttttagccgcgtatggaagtatggaaggtttgttagaa
aacacacacgagctgaaaggaaagatgaaggagaaagtggaagccaatgccgaactagga
ttgctttccaagcaactggcaaccatcatgttggatgttcccgtagaatttcacgaagaa
aattttgaaatgtgtgatcctgatttggacgccgtcaaagaaatttttaatgaattggaa
ttccgtcgtttactagataacttaatcaaaacatttgcatcgccaaaagaaaattctgcg
gaagcaaacacaacgacttcaaaaacgaccaaaaaagcagctccaaacggacagtttgac
ttattcgcaacaccaggaagcggaaataccagcgaggaaacaactgcatctggctatcaa
accatacaaaacaccgatcatttttatcaattagccaacacgccaatgtcgcgaaaaatg
ttgcttcaaaagttgctaaaacagcaaagtgtgtgttttgataccgaaactacaggttta
aaagcactcgaggtagaattggtaggtgtagcattttcatgggaaaaaggcaaaggatat
tatgtggcttttccagaagatcaagcagaaactaaagaaattttagaagaattccgtcca
ttttttgaaagtactacgattgaaaaagtaggacagaatttaaaatacgacatcaaagtc
ttgtctaactacaacatgcctgtaaaagggaagcttttcgacacgatgattgcgcattat
ttgatcaatccagacatgcgtcataacatggacgtgttgtcggaaacctatttgaattac
caaccgctttctattgtggaattgattggaaagaaagggaaaaatcaattgtcgatgcgc
gaagttccactcgaccaacaaacagaatatgcagtagaagatgcagacattacatatcag
ttgaaggaacattttatcaaagaattggaaagcggacatttgacaaaattattcacggat
gtagaaattccattggtcagtgtactttcggcgatggaaattgaaggaatcaatctcgat
cctgactttttaggtggattatccaaagacttagccatagatattgagcgtttggaaaaa
ggaatttatgagctcgcaggtgaagaattcaatattggttcaccaaagcagctcggtcca
attttgtttgataaattgaagttggtagacaaacccaaaaagaccaaaacaggacaatat
tctacggcggaagatgtactttcttatttagcaaaagatcatcaaattgtggcagatatt
ttggagtggcgacaatacagaaagctacaaagcacgtatgtagatgccttgccaaatgaa
atcaatccgaaaacaaaaagagtccatactgtatatgcacaagcggttgcggctacggga
agattgagctctaacaatccgaatttacaaaacattccaatccgaacagaacgcggacgc
caagtgcgaaaagcgtttgtgccaagagatgaaaattacgtattactcgctgccgattat
tctcagattgaattgcgaattattgcggcgttaagtgaagaagacaccatgattcaatcg
tttaaagatggtgcagatattcacgcttctacagcttcaagagtcttcaatgttgcttta
gaagatgttactcgcgaacaacgaagcaatgccaaaaccgtcaacttcggaatcatttat
ggagtttctgcgtttggattgagcaaccaaacctctttatcacgaagtgaatccaaagaa
ttgattgatacgtactatgaaacctatccaaaattaaaagcatacatggcaaatcaagta
gcgtttgctcgtgaaaatggttatgtagaaaccgttttaggaagacgtcgttatctaaaa
gatatcaattcgagaaatgcgattgtacgcggtgccgcagaacgaaacgcggtaaatgct
ccaattcaaggaagtgccgcagatattataaaacttgccatgattaatatttacaatcgt
tttgaagcggaaggtttccaatcgaaaatgctcttgcaagtacacgatgaattggtgttt
gatgcacacaaagacgagttagaaaccatcaaaactatcatcaaagaagaaatggaaaaa
gcctttaaactcgctgtacctttagacgtagaaattggtattggacaaaactggttagaa
gcgcattag
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