Kordia sp. SMS9: KORDIASMS9_02368
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Entry
KORDIASMS9_02368 CDS
T05562
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kos
Kordia sp. SMS9
Pathway
kos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KORDIASMS9_02368 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kos03021
]
KORDIASMS9_02368 (rpoC)
03400 DNA repair and recombination proteins [BR:
kos03400
]
KORDIASMS9_02368 (rpoC)
Enzymes [BR:
kos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KORDIASMS9_02368 (rpoC)
Transcription machinery [BR:
kos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KORDIASMS9_02368 (rpoC)
DNA repair and recombination proteins [BR:
kos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KORDIASMS9_02368 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
DUF4825
Motif
Other DBs
NCBI-ProteinID:
AXG70134
UniProt:
A0A345H0P6
LinkDB
All DBs
Position
2628146..2632444
Genome browser
AA seq
1432 aa
AA seq
DB search
MARNKDKNTVKRFNKISIGLASPESILAASKGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGDAKNEAGEPVQKMDFLTEEEYLNILESLPQENLY
LDDTDPNKFIAKMGAECLIELLSRIDLDQLSFDLRHKANNETSKQRKTEALKRLQVVESL
RDANKNRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILDNVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASQNILNPANGSPITVPSQDMVLGLYYMTKLRKSTPER
KIKGEGLTFYSAEEVVMAYNEKKIELNASMKIRAIDFNDEGELVPQIIETTVGRVLFNEK
VPPQAGYINEVLTKKSLRTIIGKVLRLTDIPTTSNFLDEIKGLGYGFAFRGGLSFSLGDI
IIPKEKQELIDIANKEVDTITMNYNMGLITNNERYNQVIDKWTTTNANLTELSMKHISED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNIHDCETLRGVEVKALKKSE
EVVEKLKERILGRVSLQDVYNPLTEEILVEAGQEISEEIAEAIEDSPVESVEVRSPLTCE
APKGICAKCYGRNLSTNKMVQIGEAVGVVAAQSIGEPGTQLTLRTFHMGGTASNISEENQ
LKAKFAGVAEIEELKTVQGEVADGKIGDIVISRTSEIKVIDKKTGITLSTNNIPYGSTIF
VKNGDTIQKDQAICQWDPYNGVIISEFAGKIQYENVEQGVTFQVEIDEQTGFQEKVISES
RNKKLIPTLHILNSKGEIQRSYNLPVGSHLMVDDNEKIKVGKILVKIPRKSAKSGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKFGDIRKYLVKLSNQILV
QENDYVRAGMPLSDGSITPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVIVR
QMMRKVRIGDPGDTIFLENQLIHKSDFIRENDNLYGQKVVEDAGESENFKAGQIVSPREL
RDENSVLRRADKNLVSARDVVPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDSLEGLKENVIVGHKIPAGTGMRKYDDIIVGSKEEYNEIMAAKHEINF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaataaagataagaatactgtaaagagatttaataaaatctcaatagggtta
gcctctccggagtctattttagcagcttctaaaggagaagtgttaaagcccgaaacaatt
aactatcgtacacacaaaccagagcgtgacggacttttctgtgagcgtatctttggtcct
gtaaaggattacgaatgtgcttgtggtaaatacaagagaattcgttacaaaggaatcgtt
tgtgatagatgtggtgttgaagtaacagaaaagaaagtacgaagagacagagttggtcac
atcaacttggtggtgcctgtagcacatatttggtatttccgttctttaccaaacaaaata
ggataccttttaggattaccttctaagaaattagacatgatcatatactacgaacgttac
gtagtaattcagccaggtgatgctaaaaatgaagctggagaaccagttcaaaaaatggat
ttcttaacggaagaagaatacttaaatattcttgagtcacttccgcaagaaaacttatac
ttagacgatacagaccctaacaagtttatcgctaagatgggtgctgaatgtttaattgaa
ttgttatcaagaattgatttagaccagttatcattcgacctaagacacaaagcaaataac
gaaacttcgaagcaacgtaaaacggaagcgttaaagcgtttgcaagtggttgaatcttta
cgtgacgcgaacaaaaatcgtgaaaaccgtccagaatggatgatcatgaaagttgtgcct
gtaattccaccagaattacgtccgttagtaccattagatggtggtcgtttcgcaacgtct
gacttaaatgatttataccgtagagtaattatccgtaataatcgtttaaaaaggttgatg
gagatcaaagctccagaagtaatcttacgtaacgagaagcgtatgcttcaagaatcggta
gattcattgttcgataacacgcgtaaatcatcagcagtaaaaacagattctaacagacca
ttaaaatcattatcggattccttaaaagggaagcaaggacgtttccgtcaaaacttactt
ggtaagcgtgtcgattattcagcacgttcggtaattgtggttggtccagaattaaaatta
tacgaatgtggattgcctaaaaacatggcagcagaattgtacaagccttttgtaattcgt
aaattaattgaaagaggtattgtaaaaactgtaaaatctgcaaagaaaattatagacaaa
aaagagcctgttgtttgggatattttggataacgttattaaaggacatccagtattacta
aaccgtgcgccaacgcttcaccgattaggaattcaggctttccagccaaaacttattgaa
ggaaaagcgattcagttacacccattagcgtgtacagcctttaacgccgattttgatggt
gaccaaatggcggtgcatttaccattagggccagaagcaatcttagaagcacaattatta
atgttggcttctcaaaacattctgaatcctgcaaatggttcgccaattacggtaccttct
caagatatggtattaggtttatactatatgacgaagttgcgtaaatctactcctgagcgt
aaaatcaaaggagaagggttaacgttctactctgcggaagaagtagtaatggcatataac
gagaaaaaaattgagttgaatgcttctatgaaaattagagcgattgactttaatgatgaa
ggagaattagttccgcaaataattgaaacaactgtgggacgtgtacttttcaacgaaaaa
gtaccgccacaagcaggatatatcaatgaagtattgacgaaaaaatcgttgcgtactatt
attggtaaagttttgaggttgacagacattccaacaacgtctaatttcttagatgaaatc
aaaggacttggatacgggtttgcctttagaggtggattgtcattcagcttaggagatatc
atcattccaaaagaaaagcaagaattaattgacatcgctaacaaagaggtagataccatt
accatgaactataacatgggattaattaccaacaacgagcgttacaatcaggtaattgac
aaatggacaacgaccaatgcaaacttgacagagttgtcaatgaaacacattagtgaagat
caacaaggatttaactctgtgtatatgatgcttgattctggtgcgcgtggttcgaaagag
caaattcgtcagttaacaggaatgcgtggattgatggcgaagcctaaaaaatcaaccgca
ggtggtggagaaattattgaaaatccaattctttctaactttaaagaaggattatcaatc
ttagaatactttatctctacacacggtgcgcgtaaaggtttagcggatacggcattaaaa
acagccgatgcaggatacttaacacgtcgtttagtagacgtttcgcaagatgtaattgtg
aacattcacgattgtgaaacattacgaggcgtagaagtaaaagcattaaagaaaagtgaa
gaagtagttgagaagttaaaagaacgtatcttaggtagagtttcgctacaagatgtatac
aatccattaacggaagaaatactagtagaagctggacaagaaatttcagaagaaattgca
gaagctatcgaagattctccagtagaatctgtagaagtgcgttcgccacttacgtgtgaa
gcaccaaaaggaatctgtgctaaatgttacggacgtaacctttctaccaacaaaatggtt
caaattggagaagctgttggcgttgttgctgcacaatctattggtgaacctggtacgcag
ttaacgcttcgtacattccacatgggaggaactgcgagtaacatttctgaagaaaaccaa
ttgaaagctaaatttgcaggtgttgcggaaatcgaagaattgaaaacagttcaaggtgaa
gtagcagatggaaaaataggtgacattgtcatttctcgtacctctgaaattaaagtaatt
gataagaaaacaggaattactttaagtacaaataacattccttacggatctaccattttt
gtgaaaaacggagatacaatccaaaaagatcaagctatttgtcagtgggatccatataat
ggtgtaattatctctgagtttgctggtaaaatccagtacgaaaacgtggagcaaggtgtt
accttccaagtagagattgatgagcaaacaggattccaagaaaaagtaatttctgaatca
agaaataaaaaattaattccaacacttcacattttaaatagtaaaggtgaaattcaacgt
tcatacaacttaccagtaggttctcacttaatggtagacgataatgaaaagataaaagtt
ggtaaaattttagtaaaaataccgcgtaaatctgcaaaatctggagatattacaggaggt
ttaccacgtgtaacagaattgtttgaagcgcgtaacccttcaaatccagcagtagtgtct
gagattgatggtgtagtttcttttggtaaaattaaaagaggtaaccgcgagatcattgta
gagtctaaatttggtgacatcagaaagtatttagtaaaactttccaaccaaatcctagta
caggaaaatgattatgtacgtgcaggaatgccgttatcggatggttctattacgccaaac
gacatcttaaatatcaaagggccttctgcggtacagcagtatttagttaatgaagtacaa
gaagtatatcgtttgcaaggtgtgaaaattaatgacaaacactttgaggtgattgtgcgt
caaatgatgcgtaaagtacgaattggagatccaggagataccatcttcttagaaaaccaa
ctcattcacaagtcagatttcattagagaaaacgacaatctttacggtcaaaaagtagta
gaagacgcaggtgaatcagaaaactttaaagcaggacaaatcgtttctccaagagaattg
agagatgaaaactctgtattgagaagggctgataaaaacttagtatctgcaagagacgta
gtgccagcaacggcaacaccaatcttacaaggtattacaagagcgtcgttacaaacgaaa
tcatttatctctgcggcatcgttccaagaaactacaaaagtactgaacgaagcagcggta
agcggtaaagtagattcattagaaggattaaaagaaaatgtaattgttggacataaaatt
ccagcaggaacaggaatgcgtaagtacgatgatatcattgtaggttcgaaagaagaatac
aacgaaatcatggcggcgaagcatgaaataaacttttaa
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