Kordia sp. SMS9: KORDIASMS9_02460
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Entry
KORDIASMS9_02460 CDS
T05562
Symbol
bamB
Name
(GenBank) outer membrane protein assembly factor BamB
KO
K20332
toxoflavin biosynthesis protein ToxC
Organism
kos
Kordia sp. SMS9
Pathway
kos02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KORDIASMS9_02460 (bamB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
NBCH_WD40
WD40_RFWD3
Beta-prop_NWD2_C
Beta-prop_IFT122_2nd
Vps16_N
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
DUF1513
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-ProteinID:
AXG70221
UniProt:
A0A345H0Y3
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All DBs
Position
2759009..2760697
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AA seq
562 aa
AA seq
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MITHRSPISGISAHNNRYVATAGYDNVLILWDAETKRSIARGCHDHLVNQCVFNGDGKYL
ASTSSDYTTRVWKIPSMQIQSILTGHTDDTEGISFHPTKELIATSSRDATIKIFNYNGQL
IKNLKGHELDVNSVEWMKNKDVLISSSDDGTVKFWDYESGEVIRDLSFDEVDTDTIAVSG
DGTIFAGNYEGEIVIISEEREPINVNAHKAGIKSLEYSEKQQKLISCSYDRSFKIWNYKD
GMLHLEANHQFDNMVWPRSCAFLNDSEVVFGTFGNKYAQFNLKTKQWADNNIECTYGYNA
VWESNGDIYTIGDAGYTFKNGHKIAEVGSLCNFIIDFKGNIITGGQTGEIFNAETGEVYY
QHSNPLNCAVNFKSNGEDALAIGTYNGEAVVLTIDKNGSVQYENTYKFHENAIKGIAASE
ESIFTVCAAGVAAYHDVNTFKSQKVITDGHDKIANGAVAIGNGNFASTGRDLKLRIWEDG
KVKVVDTSHKNSIKCISSDSESLIALGDYVGFVSVYDMKKDAFVAHMRVSDFGISSMTYD
TTRKLFIASCYDGKAYDIELSK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgattacacacagatcaccgattagcggaatttccgcccacaacaacagatacgttgca
accgcaggatatgacaatgttctaatcctttgggatgcagaaaccaaaagatcaattgca
agaggttgtcacgaccacctagtaaaccaatgtgtcttcaatggagatggaaagtactta
gcttctacgagttctgactatactacacgagtatggaaaattccatcgatgcaaattcaa
tcgattttaacaggacacacagacgacacagaaggaatttcatttcatcccacaaaagaa
ttaattgccaccagttcaagagatgctacaataaaaatttttaattacaacgggcaatta
ataaaaaatcttaaaggacatgagttagatgtaaactctgtagaatggatgaaaaacaaa
gatgttttgataagtagttcggatgacggaacggtaaaattttgggactatgaatcagga
gaggtaattagagacctttcatttgatgaagtagatacagacactattgctgttagtggc
gatggaactattttcgctggaaattatgaaggtgaaattgtaatcatatcagaagaaaga
gaacctattaatgtaaatgcacataaagctgggattaaaagccttgaatactcagaaaaa
cagcaaaaacttatcagctgtagttacgacagatcatttaagatttggaattataaagat
gggatgcttcatttagaggcaaaccaccaatttgacaacatggtttggccaagatcttgt
gcatttctcaatgattcagaagttgtttttggaacctttgggaacaagtatgctcaattc
aatttgaaaacaaaacaatgggcagataataatatagagtgtacctatgggtataacgca
gtatgggaatctaatggagatatctatacgattggtgatgcaggatacacttttaaaaat
ggacataaaatcgcggaagttggaagcttatgcaattttatcattgatttcaaaggaaat
attattactggaggtcagacaggtgaaatcttcaatgcagagacaggagaggtatattac
caacattccaatccattaaattgtgctgtcaactttaaaagcaacggagaagatgcatta
gcaattggaacctacaatggagaagctgtagtattgacgatcgacaaaaatggttccgtg
caatatgaaaacacatataaatttcatgaaaacgccatcaaaggaattgcagcatcggag
gaatctatatttacggtttgtgcagcaggagttgcggcatatcacgatgtcaatactttc
aaatcacaaaaagtgatcactgatggacatgataaaatcgctaacggagcggtggcaatc
ggaaatggaaacttcgcaagcacaggaagagatcttaaactaagaatttgggaagatgga
aaagtaaaggtagttgatacaagtcataaaaattcaatcaaatgtatttctagtgattct
gaaagcctaatcgcactaggagattatgttggatttgtctctgtatacgatatgaaaaaa
gacgcttttgtagcacacatgagagtcagcgattttggaatatcatctatgacgtatgat
actacacgaaaactctttattgcaagttgttatgatggaaaagcgtatgatattgaactt
agtaaataa
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