Kordia sp. SMS9: KORDIASMS9_03904
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Entry
KORDIASMS9_03904 CDS
T05562
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kos
Kordia sp. SMS9
Pathway
kos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KORDIASMS9_03904 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kos03019
]
KORDIASMS9_03904 (rhlE)
Enzymes [BR:
kos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KORDIASMS9_03904 (rhlE)
Messenger RNA biogenesis [BR:
kos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KORDIASMS9_03904 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXG71647
LinkDB
All DBs
Position
4461675..4462994
Genome browser
AA seq
439 aa
AA seq
DB search
MSFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPML
QLLSQEPPLRRRPIRALILTPTRELAAQVYANVQEYSTFLDIRSTVIFGGVNAKPQIRTL
RNGIDILVATPGRLLDLHSQKALSLAKVEMLVLDEADRMLDMGFLRDIKRVIDLMPKRRQ
NLLFSATFSKDIKKLANSILHHPVSVEATPENTTAEKVNQIVYKVNKPEKTALLIKLISD
GNWSQVLVFTRTKHGANRLTKKLIAKNISAAAIHGNKTQNARTKALGGFKKGDIRILVAT
DIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGDAISLVSAEEYEYVRGIEK
LLGEKLVAEEIEGFEADPNFTPPPKQERPQRSRQKSKLSSSRNSGGSQKNSTGNSSNSGS
SSNSRNKKRNSRSRNRRRD
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcaaatcattaggattatctgatgccttattacgcgccatcagcaaaaaaggc
tacacaacgccttctcccattcaagcaaaagcaattccgttagttttagagcgcaaagat
gttttagcatctgcccaaacaggaactggaaaaacagcaggttttaccttgcctatgttg
caattgttatcgcaagaaccaccattacgcagacgaccaattagagcgttgattttaacg
cctacgcgagaattggcggcacaagtgtatgccaatgtacaggagtatagcactttttta
gacattcgatctaccgtaatttttggtggcgtgaacgcgaaaccacaaattagaacctta
cgaaacggcatcgatattttggtggcaacacctggaagattactcgatttacacagtcag
aaagcgttatcattggcaaaagttgaaatgttagtgttggatgaagccgatagaatgttg
gatatgggatttttgcgcgatattaaacgtgtgattgatttgatgcccaaacgaagacag
aatttgttgttttcggcaacgttttcaaaagatattaagaagttagcgaatagcatttta
catcatcctgtttcggtagaagcaactcctgagaatacgactgctgagaaggtaaatcag
atcgtatataaggtaaataaacctgagaaaacggctttgttgatcaagttgatttctgat
ggtaattggagtcaggttttggtgtttacacgcacgaaacacggcgccaatcgtttgaca
aagaagttgattgctaagaatattagtgcagctgccattcatggaaataaaacacaaaat
gcacgtaccaaagcacttggtggttttaagaaaggagatattcggattttagtggcaaca
gatattgcggcgcgtggtttggacattccgttgttgccgtatgtgattaattatgaattg
cccaatgttcctgaagattatgtacacagaattggacgtacaggtcgcgctggtgcaagt
ggcgatgcaatttctttagtttctgcggaagaatatgagtatgttcgcggaattgaaaag
ttgttaggcgaaaagttagttgcagaagagattgaaggttttgaagcagatccaaatttt
acaccaccaccaaaacaagaacgtccacagcgatcgcgacagaaatcgaaactatcatcg
agtcgtaattctggtggaagtcaaaaaaatagcactggtaattcttcaaattcaggttcg
agttcaaactcaagaaataagaagcgaaattctcgttcaagaaatagacgacgtgattag
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